>SHD253 (SHD253Q) /CSM/SH/SHD2-C/SHD253Q.Seq.d/
GCAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACTTNAATAGGCCTTC
ATGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGTTCTCCAAGATGTGA
ATATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAAAGTGTATCAGTTGG
CCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATGGTAGTAAGAATAATTA
TCAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTAGATATTAAAGCTCC
AAATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTCATTCAAAAGGTGGTAA
TGGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGATACAAACACTCAATTAAA
TAATCTATTGGGTCAAAATAATGCAACCATAACAATTCCAAATGATCTTTTGTCATCTGG
TCAAACTTATACTTTTACACTTAAAATCACAAATTGGTTAAAGAAATCTGATAGCGCAAG
TGTTTCAGTAACAAAGAAAGAGGGTGAAGTTTTAGATGTAACAATTCAAGGTCCAAGTAT
TCATCGTATGGGTGCAATTGATCTAACTCTTAAAGGTAATGCTTCAGTTTCAAGTTGTXX
XXXXXXXXTTCTTCAGACATTTTAGTGGTATCCAATTCATTGGCAGATGGTATTCTTCAA
AGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAAAGGTTTCTCGATTACA
ACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGATTGGTTTCAAAAAG
GATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTCCAAAATTCAGTATT
CCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGAAATCACTGGTAAACTA
ATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCAAACCATTTTCCCAAAA
ACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCAATGGCCTTAAAGAT
CAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAAAGAATTTAAATGTGGT
TGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAGAT
GGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAAAA
TCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAGCT
GCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAAACAAAAAGAACAAA
TCAAAGAAAACCAAAGAACAAATCAACAAAGNAAAAAGNAAGNACAAAAAGAAACA

qw*fl*l*ylfss*YXNRPSCSSLFSSATLQTLGSSPRCEYTASNILMVTLGSGESVSVG
QQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLVLDASHSKGGN
GKALTYDWSVSGADTNTQLNNLLGQNNATITIPNDLLSSGQTYTFTLKITNWLKKSDSAS
VSVTKKEGEVLDVTIQGPSIHRMGAIDLTLKGNASVSSC---

---SSDILVVSNSLADGILQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSIGFKK
DDEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPK
TVSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVD
GNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKNK
SKKTKEQINKXKXKXKKK

Frame A:
amvislvvisllqlilx*afm*fsflfcnftnfg*fskm*iycfkhsngyig*w*kcisw
ptigifsrwnhfkrw**e*lsnynigtttrfnssgry*sskcfrfm*sigirc*sfkrw*
wksinl*lvg*wgrykhsik*sigsk*cnhnnsk*sfviwsnlyfyt*nhklvkei**rk
cfsnkerg*sfrcnnsrskyssygcn*sns*r*cfsfkl---

---ffrhfsgiqfigrwysskncnw*rtiysck**rfldyni*nstygik*ewsidwfqk
g**rsis*w*ktcfhskiqysikcfike*iktnl*nhw*tnyssikysfqs*i*snhfpk
ncft*tfqwwlsiinqwp*rsnyh*ygktfttkr*ri*mwlvelq*krmvnrwlfnp*sr
w*ysm*m*psyrvwfn*ickilskhldhywtsswwccicscngwyccigkekekqkqkeq
ikenqrtnqqxkkxxqket

Frame B:
qw*fl*l*ylfss*YXNRPSCSSLFSSATLQTLGSSPRCEYTASNILMVTLGSGESVSVG
QQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLVLDASHSKGGN
GKALTYDWSVSGADTNTQLNNLLGQNNATITIPNDLLSSGQTYTFTLKITNWLKKSDSAS
VSVTKKEGEVLDVTIQGPSIHRMGAIDLTLKGNASVSSC---

---SSDILVVSNSLADGILQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSIGFKK
DDEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPK
TVSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVD
GNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKNK
SKKTKEQINKXKXKXKKK

Frame C:
ngnffscdisspvdtxiglhvvlfsllqlyklwvvlqdvnillqtf*wlhwvvvkvyqla
nnwnflkveslqkmvvriiikl*hwnhhkiqlqw*ilklqmf*ihvvhwy*mlviqkvvm
ekh*pmigrlvgqiqtln*iiywvkimqp*qfqmifchlvklillhlksqig*rnliaqv
fq*qrkrvkf*m*qfkvqvfivwvqli*llkvmlqfqv---

---lqtf*wypihwqmvffkelqlvknhlqlqvikvsrlqhlklyiwn*vrvvnrlvskr
mmkvnllmvknllslqnsvfhqvfyqrin*nkplkslvn*lqfhqifisiinlikpfsqk
lfhlnfsmvalnyqsmalkiklsliwenihhqkiknlnvvggapikkng*qmvvqpik*m
vifnvnvtilqslv*lnlqnplktfgslldq*lvvlylqlqwlvllyw*rerktktkrtn
qrkpknkstkxkxxtkrn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHD253 (SHD253Q) /CSM/SH/SHD2-C/SHD253Q.Seq.d/                       2603   0.0
SHL489 (SHL489Q) /CSM/SH/SHL4-D/SHL489Q.Seq.d/                       1344   0.0
SHJ824 (SHJ824Q) /CSM/SH/SHJ8-A/SHJ824Q.Seq.d/                       1344   0.0
SHD762 (SHD762Q) /CSM/SH/SHD7-C/SHD762Q.Seq.d/                       1344   0.0
SHB414 (SHB414Q) /CSM/SH/SHB4-A/SHB414Q.Seq.d/                       1344   0.0
SFG748 (SFG748Q) /CSM/SF/SFG7-B/SFG748Q.Seq.d/                       1344   0.0
CHS207 (CHS207Q) /CSM/CH/CHS2-A/CHS207Q.Seq.d/                       1344   0.0
CHR819 (CHR819Q) /CSM/CH/CHR8-A/CHR819Q.Seq.d/                       1344   0.0
CHR576 (CHR576Q) /CSM/CH/CHR5-D/CHR576Q.Seq.d/                       1344   0.0
CHR388 (CHR388Q) /CSM/CH/CHR3-D/CHR388Q.Seq.d/                       1344   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC024453|AC024453.2 Homo sapiens chromosome 4 clone RP11-2B17 map 4, WORKING DRAFTSEQUENCE, 51 unordered pieces.    48   0.53   1
AC013774|AC013774.3 Homo sapiens clone RP11-10P1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    48   0.53   1
AC103541|AC103541.6 Homo sapiens BAC clone RP11-818M13 from 4, complete sequence.    48   0.53   1
AC097518|AC097518.2 Homo sapiens BAC clone RP11-487E13 from 4, complete sequence.    48   0.53   1
AJ410884|AJ410884.1 Influenza A virus (swine/Cotes d'Armor/1515/99 (H1N1)) partial N1NA  gene for Neuraminidase, genomic RNA.    42   1.1    2
AJ410883|AJ410883.1 Influenza A virus (swine/Cotes d'Armor/1482/99 (H1N1)) partial N1NA  gene for Neuraminidase, genomic RNA.    42   1.1    2
BI347313|BI347313.1 fbn-ek036 Cattle pUC18 mammary gland library Bos taurus cDNA, mRNA sequence.    46   2.1    1
CZ857443|CZ857443.1 OC__Ba0249B12.r OC__Ba Oryza coarctata genomic clone OC__Ba0249B12 3', genomic survey sequence.    46   2.1    1
AC092422|AC092422.3 Homo sapiens chromosome 3 clone RP11-537O8, complete sequence.    46   2.1    1
CC537472|CC537472.1 CH240_416L18.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_416L18, genomic survey sequence.    42   6.2    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF203419_1(EF203419|pid:none) Strongylocentrotus purpuratus rece...    59   3e-07
AK154648_1(AK154648|pid:none) Mus musculus NOD-derived CD11c +ve...    50   2e-04
(Q8R0T6) RecName: Full=Probable G-protein coupled receptor 97; F...    50   2e-04
AK037149_1(AK037149|pid:none) Mus musculus 6 days neonate skin c...    50   2e-04
AB041939_1(AB041939|pid:none) Homo sapiens KPG_006 mRNA for G-pr...    50   2e-04
AF216967_1(AF216967|pid:none) Homo sapiens putative vascular ind...    48   7e-04
(Q8K3V3) RecName: Full=G-protein coupled receptor 56; Flags: Pre...    47   0.002
AK295345_1(AK295345|pid:none) Homo sapiens cDNA FLJ55998 complet...    46   0.004
AF166382_1(AF166382|pid:none) Mus musculus serpentine receptor (...    45   0.005
AY181246_1(AY181246|pid:none) Homo sapiens G protein-coupled rec...    45   0.008

 psg: 0.90  gvh: 0.59  alm: 0.22  top: 1.17  tms: 0.07  mit: 0.46  mip: 0.05
 nuc: 0.19  erl: 0.00  erm: 1.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.02  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHD253 is cyt

>SHD253F.Seq
GCAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACTTNAATAGGCCTTC
ATGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGTTCTCCAAGATGTGA
ATATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAAAGTGTATCAGTTGG
CCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATGGTAGTAAGAATAATTA
TCAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTAGATATTAAAGCTCC
AAATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTCATTCAAAAGGTGGTAA
TGGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGATACAAACACTCAATTAAA
TAATCTATTGGGTCAAAATAATGCAACCATAACAATTCCAAATGATCTTTTGTCATCTGG
TCAAACTTATACTTTTACACTTAAAATCACAAATTGGTTAAAGAAATCTGATAGCGCAAG
TGTTTCAGTAACAAAGAAAGAGGGTGAAGTTTTAGATGTAACAATTCAAGGTCCAAGTAT
TCATCGTATGGGTGCAATTGATCTAACTCTTAAAGGTAATGCTTCAGTTTCAAGTTGTNN
NNNNNNNN

>SHD253Z.Seq
NNNNNNNNNNTTCTTCAGACATTTTAGTGGTATCCAATTCATTGGCAGATGGTATTCTTC
AAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAAAGGTTTCTCGATTA
CAACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGATTGGTTTCAAAA
AGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTCCAAAATTCAGTA
TTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGAAATCACTGGTAAAC
TAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCAAACCATTTTCCCAA
AAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCAATGGCCTTAAAG
ATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAAAGAATTTAAATGTG
GTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAG
ATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAA
AATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAG
CTGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAAACAAAAAGAACA
AATCAAAGAAAACCAAAGAACAAATCAACAAAGNAAAAAGNAAGNACAAAAAGAAACA

>SHD253P.Seq
GCAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACTTNAATAGGCCTTC
ATGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGTTCTCCAAGATGTGA
ATATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAAAGTGTATCAGTTGG
CCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATGGTAGTAAGAATAATTA
TCAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTAGATATTAAAGCTCC
AAATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTCATTCAAAAGGTGGTAA
TGGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGATACAAACACTCAATTAAA
TAATCTATTGGGTCAAAATAATGCAACCATAACAATTCCAAATGATCTTTTGTCATCTGG
TCAAACTTATACTTTTACACTTAAAATCACAAATTGGTTAAAGAAATCTGATAGCGCAAG
TGTTTCAGTAACAAAGAAAGAGGGTGAAGTTTTAGATGTAACAATTCAAGGTCCAAGTAT
TCATCGTATGGGTGCAATTGATCTAACTCTTAAAGGTAATGCTTCAGTTTCAAGTTGT--
--------TTCTTCAGACATTTTAGTGGTATCCAATTCATTGGCAGATGGTATTCTTCAA
AGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAAAGGTTTCTCGATTACA
ACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGATTGGTTTCAAAAAG
GATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTCCAAAATTCAGTATT
CCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGAAATCACTGGTAAACTA
ATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCAAACCATTTTCCCAAAA
ACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCAATGGCCTTAAAGAT
CAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAAAGAATTTAAATGTGGT
TGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAGAT
GGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAAAA
TCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAGCT
GCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAAACAAAAAGAACAAA
TCAAAGAAAACCAAAGAACAAATCAACAAAGNAAAAAGNAAGNACAAAAAGAAACA