SHD252 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SHD252
Library	SH (Link to library)
Clone ID	SHD252 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16526-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SH/SHD2-C/SHD252Q.Seq.d/
Representative seq. ID	SHD252P (Link to Original site)
Representative DNA sequence	>SHD252 (SHD252Q) /CSM/SH/SHD2-C/SHD252Q.Seq.d/ CAATCGCTACAAATACAAATGCCAATGTTGTTAGTTCACCACATTCAATATTTAATTCAA CCAATACTCCAATACCAAATGATGTTATTATTCAAAGACAATGGGTACCATTAGGTCCAT CACTTTCCGTTGGTCTCTTCAAGAATTGTTTTGGTGATGCAAATTTCTTTATTGAAAAGT CATCATTTAATTCAATTGGTGGTTTCACTGAGGAAGTTGGTGTTGGTTTAGAAGATCATG AAATTTTGGCAAAACTTGTTATTCAAGGATTTAAACTTTCCGTTTCAACTGAACCATTAT TATACTATAGATTCCATGATTCAGTCAATCAAATGATTTTTACAACCGATTCAAAATCAA ATCAAATGCGTTATATTCGTCCATTCTCTGAAATCCTAAGTAATGGTCATGTTCCAGTAC TCAAGGTTTTAGCAAACAATGCAATTCATGCTCAAAGTAAACGTGTTTTGGTAAACACTT GTAATATCACGCTTTCATCGATCCATCCAAATTATGGTCCAACTTCTGGTGGTTCATTGG TATCTATTAGTGGTTCTGGTTTTAATTGTGGCATTAGTAATGTATTGTTTGGTGGTGCTG CATGCTCAAATCCAAAGGTTAAAACAGATGGACTCTTAACTTGTACAAXXXXXXXXXXTT CCAATACCAAAGAATAAAAAAGATAAATCCTTTGGTGATGAAAATGATGTTCAATATATT CTTCAAGAGTTTAAAGATATCTTTGCTGAAGCTAAAAAGAGAGAACAACTTAAACTCTTG AAAAATCATCAACCAATTTCACCTGTAACTTCAATTGGTAATGTATCAAGTACAACTTCA ACTCCAATAACTTCTACAATTCAACCAGTTATTGATGAATCTTCAAGTAGTAATAATAAT AATGATAACAGTAATACAACAACTACTACAACAACTACAACTACTACAACAATAAATGAT AGAGATAAAGCAGCCAAGACAATTCAAAAGGCATGGAAAAATTATTGTAGTATCAAACAA CTTAAAAAAGAAGCTGAAGTTGAAGAATTACTTGAAAATATTGGTGAATTGTTATCTGAT AATGAAAGAGATCCATTTGAAAATTATCAAACATTAGATACTCAAATCGATGATGATGAA GATAATGATCAACCACAAGACGATAACAATAATGAATCAAACGAACAAATTGAATCAAAT GAAGATATTGAAAATAAAGATGAAGATGTTGAAAATAAAGATGAAGATGTTGAAAATAAA GATGAAGATGAAGAAGATCAAATCGAAAATTAAATATATAAAAAATTTTAAATAAAAATA AAAATAAAGAAATAATAAAAAAAATATTTTTTTTT
sequence update	2002.10.25
Translated Amino Acid sequence	IATNTNANVVSSPHSIFNSTNTPIPNDVIIQRQWVPLGPSLSVGLFKNCFGDANFFIEKS SFNSIGGFTEEVGVGLEDHEILAKLVIQGFKLSVSTEPLLYYRFHDSVNQMIFTTDSKSN QMRYIRPFSEILSNGHVPVLKVLANNAIHAQSKRVLVNTCNITLSSIHPNYGPTSGGSLV SISGSGFNCGISNVLFGGAACSNPKVKTDGLLTCT--- ---PIPKNKKDKSFGDENDVQYILQEFKDIFAEAKKREQLKLLKNHQPISPVTSIGNVSS TTSTPITSTIQPVIDESSSSNNNNDNSNTTTTTTTTTTTTINDRDKAAKTIQKAWKNYCS IKQLKKEAEVEELLENIGELLSDNERDPFENYQTLDTQIDDDEDNDQPQDDNNNESNEQI ESNEDIENKDEDVENKDEDVENKDEDEEDQIENiykkfikikikk**kkyff
Translated Amino Acid sequence (All Frames)	Frame A: qslqiqmpmllvhhiqyliqpilqyqmmllfkdngyhvhhfplvssrivlvmqisllks hhliqlvvslrklvlvkimkfwqnllfkdlnfpfqlnhyytidsmiqsikflqpiqnq ikcvifvhslksvmvmfqysrfqtmqfmlkvnvfwtlvisrfhrsiqimvqllvvhw yllvvlvlivalvmyclvvlhaqiqrlkqmdslvq--- ---fqyqrikkinplvmkmmfniffkslkisllklkrennlnskiinqfhllqlvmyq vqlqlqllqfnqllmnlqvviiimitviqqllqqlqllqqmieikqprqfkrhgkiiv vsnnlkkklklknylkilvncylimkeihlkiikhilksmmmkiminhktitimnqtnk lnqmkilkikmkmlkikmkmlkikmkmkkikskikyiknfkkkrnnkkniff Frame B: nrykykcqccfttfnifnqysntkcyysktmgtirsitfrwslqelfwckflykv iifnwwfhgswcwfrrsnfgktcysritfrfntiiilipfsqsndfynrfkik snalyssilnpkwscsstqgfskqcnscsktcfgkhlyhafidpsklwsnfwwfig iywfwflwhcivwwccmlkskgnrwtlnly--- ---sntkekrilw*kcsiyssrvrylcskertttleksstnftcnfnwcik ynfnsnnfynstsyifk*****qynnyynnynyynnk*rssqdnskgmekll* yqttkrssritkywivi*krsiklsnirysnr*rsttrrqikrtn ikrykrrckrrckrrrrsnrklnikilnknknkeiikkifff Frame C: IATNTNANVVSSPHSIFNSTNTPIPNDVIIQRQWVPLGPSLSVGLFKNCFGDANFFIEKS SFNSIGGFTEEVGVGLEDHEILAKLVIQGFKLSVSTEPLLYYRFHDSVNQMIFTTDSKSN QMRYIRPFSEILSNGHVPVLKVLANNAIHAQSKRVLVNTCNITLSSIHPNYGPTSGGSLV SISGSGFNCGISNVLFGGAACSNPKVKTDGLLTCT--- ---PIPKNKKDKSFGDENDVQYILQEFKDIFAEAKKREQLKLLKNHQPISPVTSIGNVSS TTSTPITSTIQPVIDESSSSNNNNDNSNTTTTTTTTTTTTINDRDKAAKTIQKAWKNYCS IKQLKKEAEVEELLENIGELLSDNERDPFENYQTLDTQIDDDEDNDQPQDDNNNESNEQI ESNEDIENKDEDVENKDEDVENKDEDEEDQIENiykkfikikikk**kkyff
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SHD252 (SHD252Q) /CSM/SH/SHD2-C/SHD252Q.Seq.d/ 1752 0.0 SHE351 (SHE351Q) /CSM/SH/SHE3-C/SHE351Q.Seq.d/ 1148 0.0 SHJ872 (SHJ872Q) /CSM/SH/SHJ8-C/SHJ872Q.Seq.d/ 1120 0.0 CHO145 (CHO145Q) /CSM/CH/CHO1-B/CHO145Q.Seq.d/ 1108 0.0 CHM830 (CHM830Q) /CSM/CH/CHM8-B/CHM830Q.Seq.d/ 1049 0.0 CHH623 (CHH623Q) /CSM/CH/CHH6-A/CHH623Q.Seq.d/ 1037 0.0 SHK255 (SHK255Q) /CSM/SH/SHK2-C/SHK255Q.Seq.d/ 1033 0.0 CHG590 (CHG590Q) /CSM/CH/CHG5-D/CHG590Q.Seq.d/ 1001 0.0 CHR139 (CHR139Q) /CSM/CH/CHR1-B/CHR139Q.Seq.d/ 971 0.0 CHO437 (CHO437Q) /CSM/CH/CHO4-B/CHO437Q.Seq.d/ 961 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N U82511\|U82511.1 Dictyostelium discoideum random slug cDNA19 protein (rsc19) mRNA, partial cds. 523 0.0 2 AC116956\|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 38 5e-04 8 CN776119\|CN776119.1 tae77f02.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5', mRNA sequence. 40 0.001 3 CN772051\|CN772051.1 tad94f12.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5', mRNA sequence. 40 0.001 3 AZ240389\|AZ240389.1 RPCI-23-89E14.TV RPCI-23 Mus musculus genomic clone RPCI-23-89E14, genomic survey sequence. 36 0.005 3 CN775673\|CN775673.1 tae84a06.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5', mRNA sequence. 40 0.010 2 AZ188093\|AZ188093.1 SP_1011_B1_A04_T7A Strongylocentrotus purpuratus, purple sea urchin , sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=1011 Col=7 Row=B, DNA sequence. 42 0.015 3 CN775839\|CN775839.1 tae78a10.x1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 3', mRNA sequence. 40 0.019 3 CN776161\|CN776161.1 tae78a10.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5', mRNA sequence. 40 0.020 2 CN624142\|CN624142.1 tae59h05.y1 Hydra EST Darmstadt I Hydra magnipapillata cDNA 5', mRNA sequence. 40 0.025 2
dna update	2006. 1.29
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP000970_2187(CP000970\|pid:none) Escherichia coli SMS-3-5, compl... 103 1e-20 CP000102_1487(CP000102\|pid:none) Methanosphaera stadtmanae DSM 3... 41 0.083 CP000113_4498(CP000113\|pid:none) Myxococcus xanthus DK 1622, com... 40 0.14 AE013599_1085(AE013599\|pid:none) Drosophila melanogaster chromos... 39 0.31 CR936503_1574(CR936503\|pid:none) Lactobacillus sakei strain 23K ... 39 0.41 CP001029_276(CP001029\|pid:none) Methylobacterium populi BJ001, c... 37 1.2 CP000393_2366(CP000393\|pid:none) Trichodesmium erythraeum IMS101... 35 4.5 CP000607_633(CP000607\|pid:none) Chlorobium phaeovibrioides DSM 2... 35 4.5 EU296408_5(EU296408\|pid:none) Escherichia coli serogroup O167 O-... 35 5.9 CP001037_4096(CP001037\|pid:none) Nostoc punctiforme PCC 73102, c... 35 7.7
protein update	2009. 4.16
PSORT	psg: 0.84 gvh: 0.47 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.06 nuc: 0.09 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 32.0 %: cytoplasmic 20.0 %: mitochondrial 4.0 %: cytoskeletal >> prediction for SHD252 is nuc
5' end seq. ID	SHD252F
5' end seq.	>SHD252F.Seq CAATCGCTACAAATACAAATGCCAATGTTGTTAGTTCACCACATTCAATATTTAATTCAA CCAATACTCCAATACCAAATGATGTTATTATTCAAAGACAATGGGTACCATTAGGTCCAT CACTTTCCGTTGGTCTCTTCAAGAATTGTTTTGGTGATGCAAATTTCTTTATTGAAAAGT CATCATTTAATTCAATTGGTGGTTTCACTGAGGAAGTTGGTGTTGGTTTAGAAGATCATG AAATTTTGGCAAAACTTGTTATTCAAGGATTTAAACTTTCCGTTTCAACTGAACCATTAT TATACTATAGATTCCATGATTCAGTCAATCAAATGATTTTTACAACCGATTCAAAATCAA ATCAAATGCGTTATATTCGTCCATTCTCTGAAATCCTAAGTAATGGTCATGTTCCAGTAC TCAAGGTTTTAGCAAACAATGCAATTCATGCTCAAAGTAAACGTGTTTTGGTAAACACTT GTAATATCACGCTTTCATCGATCCATCCAAATTATGGTCCAACTTCTGGTGGTTCATTGG TATCTATTAGTGGTTCTGGTTTTAATTGTGGCATTAGTAATGTATTGTTTGGTGGTGCTG CATGCTCAAATCCAAAGGTTAAAACAGATGGACTCTTAACTTGTACAANNNNNNNNNN
Length of 5' end seq.	658
3' end seq. ID	SHD252Z
3' end seq.	>SHD252Z.Seq NNNNNNNNNNTTCCAATACCAAAGAATAAAAAAGATAAATCCTTTGGTGATGAAAATGAT GTTCAATATATTCTTCAAGAGTTTAAAGATATCTTTGCTGAAGCTAAAAAGAGAGAACAA CTTAAACTCTTGAAAAATCATCAACCAATTTCACCTGTAACTTCAATTGGTAATGTATCA AGTACAACTTCAACTCCAATAACTTCTACAATTCAACCAGTTATTGATGAATCTTCAAGT AGTAATAATAATAATGATAACAGTAATACAACAACTACTACAACAACTACAACTACTACA ACAATAAATGATAGAGATAAAGCAGCCAAGACAATTCAAAAGGCATGGAAAAATTATTGT AGTATCAAACAACTTAAAAAAGAAGCTGAAGTTGAAGAATTACTTGAAAATATTGGTGAA TTGTTATCTGATAATGAAAGAGATCCATTTGAAAATTATCAAACATTAGATACTCAAATC GATGATGATGAAGATAATGATCAACCACAAGACGATAACAATAATGAATCAAACGAACAA ATTGAATCAAATGAAGATATTGAAAATAAAGATGAAGATGTTGAAAATAAAGATGAAGAT GTTGAAAATAAAGATGAAGATGAAGAAGATCAAATCGAAAATTAAATATATAAAAAATTT TAAATAAAAATAAAAATAAAGAAATAATAAAAAAAATATTTTTTTTT
Length of 3' end seq.	707
Connected seq. ID	SHD252P
Connected seq.	>SHD252P.Seq CAATCGCTACAAATACAAATGCCAATGTTGTTAGTTCACCACATTCAATATTTAATTCAA CCAATACTCCAATACCAAATGATGTTATTATTCAAAGACAATGGGTACCATTAGGTCCAT CACTTTCCGTTGGTCTCTTCAAGAATTGTTTTGGTGATGCAAATTTCTTTATTGAAAAGT CATCATTTAATTCAATTGGTGGTTTCACTGAGGAAGTTGGTGTTGGTTTAGAAGATCATG AAATTTTGGCAAAACTTGTTATTCAAGGATTTAAACTTTCCGTTTCAACTGAACCATTAT TATACTATAGATTCCATGATTCAGTCAATCAAATGATTTTTACAACCGATTCAAAATCAA ATCAAATGCGTTATATTCGTCCATTCTCTGAAATCCTAAGTAATGGTCATGTTCCAGTAC TCAAGGTTTTAGCAAACAATGCAATTCATGCTCAAAGTAAACGTGTTTTGGTAAACACTT GTAATATCACGCTTTCATCGATCCATCCAAATTATGGTCCAACTTCTGGTGGTTCATTGG TATCTATTAGTGGTTCTGGTTTTAATTGTGGCATTAGTAATGTATTGTTTGGTGGTGCTG CATGCTCAAATCCAAAGGTTAAAACAGATGGACTCTTAACTTGTACAA----------TT CCAATACCAAAGAATAAAAAAGATAAATCCTTTGGTGATGAAAATGATGTTCAATATATT CTTCAAGAGTTTAAAGATATCTTTGCTGAAGCTAAAAAGAGAGAACAACTTAAACTCTTG AAAAATCATCAACCAATTTCACCTGTAACTTCAATTGGTAATGTATCAAGTACAACTTCA ACTCCAATAACTTCTACAATTCAACCAGTTATTGATGAATCTTCAAGTAGTAATAATAAT AATGATAACAGTAATACAACAACTACTACAACAACTACAACTACTACAACAATAAATGAT AGAGATAAAGCAGCCAAGACAATTCAAAAGGCATGGAAAAATTATTGTAGTATCAAACAA CTTAAAAAAGAAGCTGAAGTTGAAGAATTACTTGAAAATATTGGTGAATTGTTATCTGAT AATGAAAGAGATCCATTTGAAAATTATCAAACATTAGATACTCAAATCGATGATGATGAA GATAATGATCAACCACAAGACGATAACAATAATGAATCAAACGAACAAATTGAATCAAAT GAAGATATTGAAAATAAAGATGAAGATGTTGAAAATAAAGATGAAGATGTTGAAAATAAA GATGAAGATGAAGAAGATCAAATCGAAAATTAAATATATAAAAAATTTTAAATAAAAATA AAAATAAAGAAATAATAAAAAAAATATTTTTTTTT
Length of connected seq.	1345
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas