>SHD244 (SHD244Q) /CSM/SH/SHD2-B/SHD244Q.Seq.d/
TGTTTCAACCATTGCAATTACTTCATGTGCACTCGGTGCAAACAATGGTAATTTCTTTAG
TTGTGATATCTCTTCTCCAGTTGATACTTNAATAGGCCTTCATGTAGTTCTCTTTTCTCT
TCTGCAACTTTACAAACTTTGGGTAGTTCTCCAAGATGTGAATATACTGCTTCAAACATT
CTAATGGTTACATTGGGTAGTGGTGAAAGTGTATCAGTTGGCCAACAATTGGAATTTTCT
CAAGGTGGAATCACTTCAAAAGATGGTAGTAAGAATAATTATCAAACTATAACATTGGAA
CCACCACAAGATTCAACTCCAGTGGTAGATATTAAAGCTCCAAATGTTTTAGATTCATGT
AGTCCATTGGTATTAGATGCTAGTCATTCAAAAGGTGGTAATGGAAAAGCATTAACCTAT
GATTGGTCGGTTAGTGGGGCAGATACAAACACTCAATTAAATAATCTATTGGATCAAAAT
AATGCAACCATAACAATTCCAAATGATCTTTTGTCATCTGGTCAAACTTATACTTTTACA
CTTAAAATCACAAATTGGTTAAAGAAATCTGATAGCGCAAGTGTTTCAGTAACAXXXXXX
XXXXATGGTTTATAATGTTTCTTCAGACATTTTAGTGGTATCCAATTCATTGGCAGATGG
TATTCTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAAAGGTTT
CTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGATTGG
TTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTCCAAA
ATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAAGCTCTGAAATCAC
TGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCAAACCAT
TTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCAATGG
CCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAAAGAATT
TAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCA
TAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTGA
ATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGT
ATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAAACAA
AAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAAGAAAAAGAAGACAAAAAGAA
ACAAGCAAAAGAAAAGAAAGAAGC

cfnhcnyfmctrckqw*fl*l*ylfss*YXNRPSCSSLFSSATLQTLGSSPRCEYTASNI
LMVTLGSGESVSVGQQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSC
SPLVLDASHSKGGNGKALTYDWSVSGADTNTQLNNLLDQNNATITIPNDLLSSGQTYTFT
LKITNWLKKSDSASVSVT---

---MVYNVSSDILVVSNSLADGILQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQS
IGFKKDDEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQSSEITGKLITVPSNIHFNHKSDQ
TIFPKTVSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCS
THKVDGNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNK
NKKNKSKKTKEQINKEKEDKKKQAKEKKE

Frame A:
cfnhcnyfmctrckqw*fl*l*ylfss*YXNRPSCSSLFSSATLQTLGSSPRCEYTASNI
LMVTLGSGESVSVGQQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSC
SPLVLDASHSKGGNGKALTYDWSVSGADTNTQLNNLLDQNNATITIPNDLLSSGQTYTFT
LKITNWLKKSDSASVSVT---

---MVYNVSSDILVVSNSLADGILQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQS
IGFKKDDEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQSSEITGKLITVPSNIHFNHKSDQ
TIFPKTVSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCS
THKVDGNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNK
NKKNKSKKTKEQINKEKEDKKKQAKEKKE

Frame B:
vstiaitscalganngnffscdisspvdtxiglhvvlfsllqlyklwvvlqdvnillqtf
*wlhwvvvkvyqlannwnflkveslqkmvvriiikl*hwnhhkiqlqw*ilklqmf*ihv
vhwy*mlviqkvvmekh*pmigrlvgqiqtln*iiywikimqp*qfqmifchlvklillh
lksqig*rnliaqvfq*---

---wfimflqtf*wypihwqmvffkelqlvknhlqlqvikvsrlqhlklyiwn*vrvvnr
lvskrmmkvnllmvknllslqnsvfhqvfyqrin*nkalkslvn*lqfhqifisiinlik
pfsqklfhlnfsmvalnyqsmalkiklsliwenihhqkiknlnvvggapikkng*qmvvq
pik*mvifnvnvtilqslv*lnlqnplktfgslldq*lvvlylqlqwlvllyw*rerktk
tkrtnqrkpknkstkkkktkrnkqkkrkk

Frame C:
fqplqllhvhsvqtmvislvvisllqlilx*afm*fsflfcnftnfg*fskm*iycfkhs
ngyig*w*kciswptigifsrwnhfkrw**e*lsnynigtttrfnssgry*sskcfrfm*
sigirc*sfkrw*wksinl*lvg*wgrykhsik*sigsk*cnhnnsk*sfviwsnlyfyt
*nhklvkei**rkcfsn---

---gl*cffrhfsgiqfigrwysskncnw*rtiysck**rfldyni*nstygik*ewsid
wfqkg**rsis*w*ktcfhskiqysikcfike*iktkl*nhw*tnyssikysfqs*i*sn
hfpkncft*tfqwwlsiinqwp*rsnyh*ygktfttkr*ri*mwlvelq*krmvnrwlfn
p*srw*ysm*m*psyrvwfn*ickilskhldhywtsswwccicscngwyccigkekekqk
qkeqikenqrtnqqrkrrqketskrkers

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHD244 (SHD244Q) /CSM/SH/SHD2-B/SHD244Q.Seq.d/                       2502   0.0
SHL489 (SHL489Q) /CSM/SH/SHL4-D/SHL489Q.Seq.d/                       1362   0.0
SHB414 (SHB414Q) /CSM/SH/SHB4-A/SHB414Q.Seq.d/                       1362   0.0
SFG748 (SFG748Q) /CSM/SF/SFG7-B/SFG748Q.Seq.d/                       1362   0.0
CHR576 (CHR576Q) /CSM/CH/CHR5-D/CHR576Q.Seq.d/                       1362   0.0
CHR150 (CHR150Q) /CSM/CH/CHR1-C/CHR150Q.Seq.d/                       1362   0.0
CHL279 (CHL279Q) /CSM/CH/CHL2-D/CHL279Q.Seq.d/                       1362   0.0
CHI858 (CHI858Q) /CSM/CH/CHI8-C/CHI858Q.Seq.d/                       1362   0.0
CHI747 (CHI747Q) /CSM/CH/CHI7-B/CHI747Q.Seq.d/                       1362   0.0
CHI163 (CHI163Q) /CSM/CH/CHI1-C/CHI163Q.Seq.d/                       1362   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC024453|AC024453.2 Homo sapiens chromosome 4 clone RP11-2B17 map 4, WORKING DRAFTSEQUENCE, 51 unordered pieces.    48   0.52   1
AC013774|AC013774.3 Homo sapiens clone RP11-10P1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    48   0.52   1
AC103541|AC103541.6 Homo sapiens BAC clone RP11-818M13 from 4, complete sequence.    48   0.52   1
AC097518|AC097518.2 Homo sapiens BAC clone RP11-487E13 from 4, complete sequence.    48   0.52   1
AJ410884|AJ410884.1 Influenza A virus (swine/Cotes d'Armor/1515/99 (H1N1)) partial N1NA  gene for Neuraminidase, genomic RNA.    42   1.0    2
AJ410883|AJ410883.1 Influenza A virus (swine/Cotes d'Armor/1482/99 (H1N1)) partial N1NA  gene for Neuraminidase, genomic RNA.    42   1.1    2
BI347313|BI347313.1 fbn-ek036 Cattle pUC18 mammary gland library Bos taurus cDNA, mRNA sequence.    46   2.1    1
CZ857443|CZ857443.1 OC__Ba0249B12.r OC__Ba Oryza coarctata genomic clone OC__Ba0249B12 3', genomic survey sequence.    46   2.1    1
AP006841|AP006841.1 Bacteroides fragilis YCH46 DNA, complete genome.    46   2.1    1
AC114561|AC114561.7 Mus musculus chromosome 6, clone RP23-54F12, complete sequence.    46   2.1    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF203419_1(EF203419|pid:none) Strongylocentrotus purpuratus rece...    54   2e-05
AK154648_1(AK154648|pid:none) Mus musculus NOD-derived CD11c +ve...    50   2e-04
(Q8R0T6) RecName: Full=Probable G-protein coupled receptor 97; F...    50   2e-04
AK037149_1(AK037149|pid:none) Mus musculus 6 days neonate skin c...    50   2e-04
AB041939_1(AB041939|pid:none) Homo sapiens KPG_006 mRNA for G-pr...    50   2e-04
AF216967_1(AF216967|pid:none) Homo sapiens putative vascular ind...    48   0.001
(Q8K3V3) RecName: Full=G-protein coupled receptor 56; Flags: Pre...    47   0.002
AK295345_1(AK295345|pid:none) Homo sapiens cDNA FLJ55998 complet...    46   0.003
AF166382_1(AF166382|pid:none) Mus musculus serpentine receptor (...    45   0.005
AY181246_1(AY181246|pid:none) Homo sapiens G protein-coupled rec...    45   0.008

 psg: 0.90  gvh: 0.59  alm: 0.22  top: 1.17  tms: 0.07  mit: 0.46  mip: 0.05
 nuc: 0.17  erl: 0.00  erm: 1.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHD244 is cyt

>SHD244F.Seq
TGTTTCAACCATTGCAATTACTTCATGTGCACTCGGTGCAAACAATGGTAATTTCTTTAG
TTGTGATATCTCTTCTCCAGTTGATACTTNAATAGGCCTTCATGTAGTTCTCTTTTCTCT
TCTGCAACTTTACAAACTTTGGGTAGTTCTCCAAGATGTGAATATACTGCTTCAAACATT
CTAATGGTTACATTGGGTAGTGGTGAAAGTGTATCAGTTGGCCAACAATTGGAATTTTCT
CAAGGTGGAATCACTTCAAAAGATGGTAGTAAGAATAATTATCAAACTATAACATTGGAA
CCACCACAAGATTCAACTCCAGTGGTAGATATTAAAGCTCCAAATGTTTTAGATTCATGT
AGTCCATTGGTATTAGATGCTAGTCATTCAAAAGGTGGTAATGGAAAAGCATTAACCTAT
GATTGGTCGGTTAGTGGGGCAGATACAAACACTCAATTAAATAATCTATTGGATCAAAAT
AATGCAACCATAACAATTCCAAATGATCTTTTGTCATCTGGTCAAACTTATACTTTTACA
CTTAAAATCACAAATTGGTTAAAGAAATCTGATAGCGCAAGTGTTTCAGTAACANNNNNN
NNNN

>SHD244Z.Seq
NNNNNNNNNNATGGTTTATAATGTTTCTTCAGACATTTTAGTGGTATCCAATTCATTGGC
AGATGGTATTCTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAA
AGGTTTCTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATC
GATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCAC
TCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAAGCTCTGA
AATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCA
AACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAAT
CAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAA
AGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTC
AACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTT
AATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGG
TGTTGTATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAA
AAACAAAAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAAGAAAAAGAAGACAA
AAAGAAACAAGCAAAAGAAAAGAAAGAAGC

>SHD244P.Seq
TGTTTCAACCATTGCAATTACTTCATGTGCACTCGGTGCAAACAATGGTAATTTCTTTAG
TTGTGATATCTCTTCTCCAGTTGATACTTNAATAGGCCTTCATGTAGTTCTCTTTTCTCT
TCTGCAACTTTACAAACTTTGGGTAGTTCTCCAAGATGTGAATATACTGCTTCAAACATT
CTAATGGTTACATTGGGTAGTGGTGAAAGTGTATCAGTTGGCCAACAATTGGAATTTTCT
CAAGGTGGAATCACTTCAAAAGATGGTAGTAAGAATAATTATCAAACTATAACATTGGAA
CCACCACAAGATTCAACTCCAGTGGTAGATATTAAAGCTCCAAATGTTTTAGATTCATGT
AGTCCATTGGTATTAGATGCTAGTCATTCAAAAGGTGGTAATGGAAAAGCATTAACCTAT
GATTGGTCGGTTAGTGGGGCAGATACAAACACTCAATTAAATAATCTATTGGATCAAAAT
AATGCAACCATAACAATTCCAAATGATCTTTTGTCATCTGGTCAAACTTATACTTTTACA
CTTAAAATCACAAATTGGTTAAAGAAATCTGATAGCGCAAGTGTTTCAGTAACA------
----ATGGTTTATAATGTTTCTTCAGACATTTTAGTGGTATCCAATTCATTGGCAGATGG
TATTCTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAAAGGTTT
CTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGATTGG
TTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTCCAAA
ATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAAGCTCTGAAATCAC
TGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCAAACCAT
TTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCAATGG
CCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAAAGAATT
TAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCA
TAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTGA
ATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGT
ATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAAACAA
AAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAAGAAAAAGAAGACAAAAAGAA
ACAAGCAAAAGAAAAGAAAGAAGC