>SHD236 (SHD236Q) /CSM/SH/SHD2-B/SHD236Q.Seq.d/
XXXXXXXXXXATTAGTCCTGTAACCCCTTCAAAACCAATGGAGCAAATCACTCAACCATC
ACCAATTTCAACCAGTGAAGAAGCATTTGGTAAATTAAATAAACTTTCAATTTCTGAAGA
ACCATCAACATTATCAAATGAAAAATCTGATAAAACTACTGATGGTGGTGATCATCAAGA
TGAATCAATTTCAAAGTCAAAGGTTCAAAGTAAACCAACTACTGAACATCCAAATAGTAC
TGGTGCAACACCATCCTCAACAAATTCAGGAACACCAACTATCAAAGCTTTTTCAAGTAC
AACACCAAATCAAGAATCACCAAAATTGGGTGGTGATGGTATAGACTCTCAATCATCCAC
TCCAAATAAACAACAACTACCTCCACCACCACCACAACAAACAAAGAAAACCCAAATGGT
ATCTCATTTCATGCCAACTGATGAATGGTTACAAGATATTAAAAAACAATTACCATTAGA
TAATATCTTAAAAGTTATAACTCATTTATCACCACAAATTCAAGGTTTATGCACTGGTTC
GGGATCTGACGAACAAAAAATCATGGACTACTTGAAAATGTCAACAATTGTTGGCATTTT
CCAT

---SPVTPSKPMEQITQPSPISTSEEAFGKLNKLSISEEPSTLSNEKSDKTTDGGDHQDE
SISKSKVQSKPTTEHPNSTGATPSSTNSGTPTIKAFSSTTPNQESPKLGGDGIDSQSSTP
NKQQLPPPPPQQTKKTQMVSHFMPTDEWLQDIKKQLPLDNILKVITHLSPQIQGLCTGSG
SDEQKIMDYLKMSTIVGIFH

Frame A:
---lvl*plqnqwskslnhhqfqpvkkhlvn*infqflknhqhyqmknlikllmvviikm
nqfqsqrfkvnqllniqivlvqhhpqqiqehqlsklfqvqhqiknhqnwvvmv*tlnhpl
qinnnylhhhhnkqrkpkwyliscqlmngykilknnyh*iis*kl*liyhhkfkvyalvr
dltnkkswtt*kcqqllafs


Frame B:
---*scnpfktnganhstitnfnq*rsiw*ik*tfnf*rtiniik*ki**ny*ww*ssr*
infkvkgsk*tny*tsk*ywcntilnkfrntnyqsffkyntksritkigw*wyrlsiihs
k*ttttstttttnkenpngisfhan**mvtry*ktitir*ylksynsfittnsrfmhwfg
i*rtknhgllenvnncwhfp


Frame C:
---SPVTPSKPMEQITQPSPISTSEEAFGKLNKLSISEEPSTLSNEKSDKTTDGGDHQDE
SISKSKVQSKPTTEHPNSTGATPSSTNSGTPTIKAFSSTTPNQESPKLGGDGIDSQSSTP
NKQQLPPPPPQQTKKTQMVSHFMPTDEWLQDIKKQLPLDNILKVITHLSPQIQGLCTGSG
SDEQKIMDYLKMSTIVGIFH

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA877 (SLA877Q) /CSM/SL/SLA8-D/SLA877Q.Seq.d/                       1178   0.0
SHD236 (SHD236Q) /CSM/SH/SHD2-B/SHD236Q.Seq.d/                       1178   0.0
CHI112 (CHI112Q) /CSM/CH/CHI1-A/CHI112Q.Seq.d/                       1178   0.0
SHL344 (SHL344Q) /CSM/SH/SHL3-B/SHL344Q.Seq.d/                       1176   0.0
SHD593 (SHD593Q) /CSM/SH/SHD5-D/SHD593Q.Seq.d/                       1172   0.0
CHF409 (CHF409Q) /CSM/CH/CHF4-A/CHF409Q.Seq.d/                       1172   0.0
CHS144 (CHS144Q) /CSM/CH/CHS1-B/CHS144Q.Seq.d/                       1170   0.0
CHQ792 (CHQ792Q) /CSM/CH/CHQ7-D/CHQ792Q.Seq.d/                       1170   0.0
CHL508 (CHL508Q) /CSM/CH/CHL5-A/CHL508Q.Seq.d/                       1170   0.0
SHD882 (SHD882Q) /CSM/SH/SHD8-D/SHD882Q.Seq.d/                       1168   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC124060|AC124060.3 Homo sapiens chromosome 8 clone RP11-65D13 map 8, WORKING DRAFT SEQUENCE.    50   5e-05  2
AC139351|AC139351.4 Mus musculus BAC clone RP24-156K15 from 8, complete sequence.    56   9e-04  1
DE283369|DE283369.1 Oryzias latipes DNA, clone: ola1-242I19.F, genomic survey sequence.    54   0.004  1
DE092915|DE092915.1 Oryzias latipes DNA, clone: ola1-209J09.R, genomic survey sequence.    54   0.004  1
DE086252|DE086252.1 Oryzias latipes DNA, clone: ola1-188M19.F, genomic survey sequence.    54   0.004  1
DE078411|DE078411.1 Oryzias latipes DNA, clone: ola1-200D13.F, genomic survey sequence.    54   0.004  1
DE075571|DE075571.1 Oryzias latipes DNA, clone: ola1-178O04.F, genomic survey sequence.    54   0.004  1
DE067405|DE067405.1 Oryzias latipes DNA, clone: ola1-164C24.R, genomic survey sequence.    54   0.004  1
DE057397|DE057397.1 Oryzias latipes DNA, clone: ola1-099G20.R, genomic survey sequence.    54   0.004  1
AC027286|AC027286.14 Homo sapiens chromosome 3 clone RP11-329I19, WORKING DRAFT SEQUENCE, 19 unordered pieces.    52   0.014  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064723_1(BC064723|pid:none) Xenopus tropicalis hypothetical pr...    49   1e-04
(Q8IV36) RecName: Full=UPF0663 transmembrane protein C17orf28; A...    48   2e-04
AK304081_1(AK304081|pid:none) Homo sapiens cDNA FLJ57287 complet...    48   2e-04
BC076413_1(BC076413|pid:none) Danio rerio zgc:100980, mRNA (cDNA...    48   2e-04
AB171620_1(AB171620|pid:none) Macaca fascicularis brain cDNA clo...    48   2e-04
AK044395_1(AK044395|pid:none) Mus musculus adult retina cDNA, RI...    48   2e-04
AE013599_1507(AE013599|pid:none) Drosophila melanogaster chromos...    48   2e-04
(Q8R1F6) RecName: Full=UPF0663 transmembrane protein C17orf28 ho...    48   2e-04
AK138882_1(AK138882|pid:none) Mus musculus 0 day neonate thymus ...    48   2e-04
AK050531_1(AK050531|pid:none) Mus musculus adult pancreas islet ...    48   2e-04

 psg: 0.80  gvh: 0.30  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SHD236 is cyt

>SHD236Z.Seq
NNNNNNNNNNATTAGTCCTGTAACCCCTTCAAAACCAATGGAGCAAATCACTCAACCATC
ACCAATTTCAACCAGTGAAGAAGCATTTGGTAAATTAAATAAACTTTCAATTTCTGAAGA
ACCATCAACATTATCAAATGAAAAATCTGATAAAACTACTGATGGTGGTGATCATCAAGA
TGAATCAATTTCAAAGTCAAAGGTTCAAAGTAAACCAACTACTGAACATCCAAATAGTAC
TGGTGCAACACCATCCTCAACAAATTCAGGAACACCAACTATCAAAGCTTTTTCAAGTAC
AACACCAAATCAAGAATCACCAAAATTGGGTGGTGATGGTATAGACTCTCAATCATCCAC
TCCAAATAAACAACAACTACCTCCACCACCACCACAACAAACAAAGAAAACCCAAATGGT
ATCTCATTTCATGCCAACTGATGAATGGTTACAAGATATTAAAAAACAATTACCATTAGA
TAATATCTTAAAAGTTATAACTCATTTATCACCACAAATTCAAGGTTTATGCACTGGTTC
GGGATCTGACGAACAAAAAATCATGGACTACTTGAAAATGTCAACAATTGTTGGCATTTT
CCAT