>SHD202 (SHD202Q) /CSM/SH/SHD2-A/SHD202Q.Seq.d/
XXXXXXXXXXCATTTANAACAAATTCAACAACACCAACATCAGCAACATCAACACCAGAT
TCAATGATTACACCAACTAAATCAAAAGGATCATCAAATAAATTGAATTCAAAAGAAGAT
AAGAATTTAAAGAAACAAAAACAAAAAGAGGAAAAAGAAAGATTAGAAATGGA

---FXTNSTTPTSATSTPDSMITPTKSKGSSNKLNSKEDKNLKKQKQKEEKERLEM

Frame A:
---ixnkfnntnisnintrfndytn*ikriik*iefkrr*efketktkrgkrkirng


Frame B:
---FXTNSTTPTSATSTPDSMITPTKSKGSSNKLNSKEDKNLKKQKQKEEKERLEM


Frame C:
---lxqiqqhqhqqhqhqiq*lhqlnqkdhqin*iqkkiri*rnknkkrkkkd*kw

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHD202 (SHD202Q) /CSM/SH/SHD2-A/SHD202Q.Seq.d/                        190   5e-48
CHP826 (CHP826Q) /CSM/CH/CHP8-B/CHP826Q.Seq.d/                        168   2e-41
CHJ474 (CHJ474Q) /CSM/CH/CHJ4-D/CHJ474Q.Seq.d/                        149   2e-35
SFE765 (SFE765Q) /CSM/SF/SFE7-C/SFE765Q.Seq.d/                        121   3e-27
VHC780 (VHC780Q) /CSM/VH/VHC7-D/VHC780Q.Seq.d/                         50   1e-05
SLA357 (SLA357Q) /CSM/SL/SLA3-C/SLA357Q.Seq.d/                         50   1e-05
SHD195 (SHD195Q) /CSM/SH/SHD1-D/SHD195Q.Seq.d/                         50   1e-05
SLJ883 (SLJ883Q) /CSM/SL/SLJ8-D/SLJ883Q.Seq.d/                         44   7e-04
SLC619 (SLC619Q) /CSM/SL/SLC6-A/SLC619Q.Seq.d/                         44   7e-04
SHK802 (SHK802Q) /CSM/SH/SHK8-A/SHK802Q.Seq.d/                         44   7e-04

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC114265|AC114265.2 Dictyostelium discoideum chromosome 2 map 4520461-4544940 strain AX4, complete sequence.   182   2e-42  1
BM595713|BM595713.1 17000687477227 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449734583 5', mRNA sequence.    52   0.004  1
AG943940|AG943940.1 Drosophila ananassae DNA, clone: DNB1-018J03.F.fa, genomic survey sequence.    52   0.004  1
AL160412|AL160412.14 Human DNA sequence from clone RP5-827E24 on chromosome 20 Contains  ESTs, STSs and GSSs.    48   0.010  2
CD458435|CD458435.1 Fg08_12a10_A Fg08_AAFC_ECORC_Fusarium_graminearum_complex_substrate Gibberella zeae cDNA clone Fg08_12a10, mRNA sequence.    50   0.014  1
CD457838|CD457838.1 Fg04d_02e18_A Fg04_AAFC_ECORC_Fusarium_graminearum_mycelium_grown_on_wheat_heads Gibberella zeae cDNA clone Fg04d_02e18, mRNA sequence.    50   0.014  1
CD457595|CD457595.1 Fg04c_01a03_A Fg04_AAFC_ECORC_Fusarium_graminearum_mycelium_grown_on_wheat_heads Gibberella zeae cDNA clone Fg04c_01a03, mRNA sequence.    50   0.014  1
AC130748|AC130748.4 Rattus norvegicus clone CH230-144B18, WORKING DRAFT SEQUENCE, 5 unordered pieces.    50   0.014  1
AC126298|AC126298.3 Rattus norvegicus clone CH230-31B17, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    50   0.014  1
AC113904|AC113904.5 Rattus norvegicus clone CH230-318P21, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50   0.014  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 42,800,498

 psg: 0.83  gvh: 0.45  alm: 0.67  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 32.0 %: nuclear
	  4.0 %: peroxisomal

>> prediction for SHD202 is cyt

>SHD202Z.Seq
NNNNNNNNNNCATTTANAACAAATTCAACAACACCAACATCAGCAACATCAACACCAGAT
TCAATGATTACACCAACTAAATCAAAAGGATCATCAAATAAATTGAATTCAAAAGAAGAT
AAGAATTTAAAGAAACAAAAACAAAAAGAGGAAAAAGAAAGATTAGAAATGGA