>SHD187 (SHD187Q) /CSM/SH/SHD1-D/SHD187Q.Seq.d/
ACATATCCCATGATANATGAAAAACCCCACCAAAATCAACANCAAAGACAAGAATNNTGA
AAATACAGAACATCACCTAATCAATCAATTTGATAATAAAAACTNTGCTTCACTTTTGAA
TCAGAGTGGTAATTATCAAAATAGTATGAACAACAGCAACAACAACAACAATCAACAAAG
TTATAAAAGACAACACAGCGACACAAGCGATTCCGATTTAACCAGTAXXXXXXXXXXTAC
TCAAGGTGATATTTTTCATAATGCAAGATCCAAACCATATGGTGAANACTTATAAACAAG
GTGATGTCATTGGTTTTTACATTAATTNACCATTGGAAGAGGATGATATCAATAAAGAAA
AGATTAAAGAATTTCCAAATATTAATCAATTAGATATCTATGAAATGATTTCAAATGATT
TATCATTACCATCCGATCAACCATTAACACCATTGAAAGGTAGTTTTATTCAATTCTTTA
AGAATGGTCTTTCACC

hip*XMKNPTKINXKDKNXENTEHHLINQFDNKNXASLLNQSGNYQNSMNNSNNNNNQQS
YKRQHSDTSDSDLTS---

---LKVIFFIMQDPNHMVXTYKQGDVIGFYINXPLEEDDINKEKIKEFPNINQLDIYEMI
SNDLSLPSDQPLTPLKGSFIQFFKNGLS

Frame A:
typmixekphqnqxqrqex*kyrtspnqsi***klcftfesew*lsk*yeqqqqqqqstk
l*kttqrhkrfrfnq---

---ysr*yfs*ckiqtiw*xlinkvmslvftlixhwkrmisikkrlknfqilin*ismk*
fqmiyhyhpinh*hh*kvvlfnslrmvfh

Frame B:
hip*XMKNPTKINXKDKNXENTEHHLINQFDNKNXASLLNQSGNYQNSMNNSNNNNNQQS
YKRQHSDTSDSDLTS---

---tqgdifhnarskpygexl*tr*chwflh*xtigrg*yq*rkd*risky*siryl*nd
fk*fiitirstintier*fysil*ewsft

Frame C:
ishdx*ktppkstxktrxxkiqnit*sinliiktxlhf*irvviikiv*ttattttinkv
ikdntatqaipi*pv---

---LKVIFFIMQDPNHMVXTYKQGDVIGFYINXPLEEDDINKEKIKEFPNINQLDIYEMI
SNDLSLPSDQPLTPLKGSFIQFFKNGLS

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHD187 (SHD187Q) /CSM/SH/SHD1-D/SHD187Q.Seq.d/                        559   e-158
SHH396 (SHH396Q) /CSM/SH/SHH3-D/SHH396Q.Seq.d/                        492   e-138
SHC587 (SHC587Q) /CSM/SH/SHC5-D/SHC587Q.Seq.d/                        492   e-138
AHR354 (AHR354Q) /CSM/AH/AHR3-C/AHR354Q.Seq.d/                        492   e-138
AHM256 (AHM256Q) /CSM/AH/AHM2-C/AHM256Q.Seq.d/                        492   e-138
AHK727 (AHK727Q) /CSM/AH/AHK7-B/AHK727Q.Seq.d/                        492   e-138
AHC450 (AHC450Q) /CSM/AH/AHC4-C/AHC450Q.Seq.d/                        492   e-138
CFA643 (CFA643Q) /CSM/CF/CFA6-B/CFA643Q.Seq.d/                        246   3e-64
AHA577 (AHA577Q) /CSM/AH/AHA5-D/AHA577Q.Seq.d/                        246   3e-64
CFB691 (CFB691Q) /CSM/CF/CFB6-D/CFB691Q.Seq.d/                         90   4e-17

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.   408   0.0    5
AC111456|AC111456.5 Rattus norvegicus clone CH230-207N18, WORKING DRAFT SEQUENCE, 6 unordered pieces.    38   0.038  4
AC093988|AC093988.6 Rattus norvegicus clone CH230-46N24, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    38   0.25   3
DQ011155|DQ011155.1 Monkeypox virus strain Zaire_1979-005, complete genome.    32   0.38   2
DV863922|DV863922.1 CRP3654 Creeping bentgrass EST Agrostis stolonifera cDNA clone CRP273T_G09 3', mRNA sequence.    46   0.71   1
DV856149|DV856149.1 col3409 Colonial bentgrass EST Agrostis capillaris cDNA clone COL382T_C09 3', mRNA sequence.    46   0.71   1
AC112194|AC112194.1 Homo sapiens chromosome 5 clone RP11-434M20, WORKING DRAFT SEQUENCE, 31 unordered pieces.    46   0.71   1
AC012287|AC012287.2 Homo sapiens clone RP11-5H14, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces.    46   0.71   1
B49217|B49217.1 RPCI11-5H14.TP RPCI-11 Homo sapiens genomic clone RPCI-11-5H14, genomic survey sequence.    46   0.71   1
B63942|B63942.1 RPCI11-5I13.TPB RPCI-11 Homo sapiens genomic clone RPCI-11-5I13, genomic survey sequence.    46   0.71   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117072_18(AC117072|pid:none) Dictyostelium discoideum chromoso...   113   1e-29
AC117072_19(AC117072|pid:none) Dictyostelium discoideum chromoso...    50   4e-05
AB210759_1(AB210759|pid:none) Ciona intestinalis Ci-ash2-like mR...    33   3.5
AC024261_16(AC024261|pid:none) Arabidopsis thaliana chromosome 1...    33   4.5
BT034538_1(BT034538|pid:none) Zea mays full-length cDNA clone ZM...    33   4.5
EU970596_1(EU970596|pid:none) Zea mays clone 347706 SPRY domain ...    33   4.5

 psg: 0.38  gvh: 0.18  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SHD187 is cyt

>SHD187F.Seq
ACATATCCCATGATANATGAAAAACCCCACCAAAATCAACANCAAAGACAAGAATNNTGA
AAATACAGAACATCACCTAATCAATCAATTTGATAATAAAAACTNTGCTTCACTTTTGAA
TCAGAGTGGTAATTATCAAAATAGTATGAACAACAGCAACAACAACAACAATCAACAAAG
TTATAAAAGACAACACAGCGACACAAGCGATTCCGATTTAACCAGTANNNNNNNNNN

>SHD187Z.Seq
NNNNNNNNNNTACTCAAGGTGATATTTTTCATAATGCAAGATCCAAACCATATGGTGAAN
ACTTATAAACAAGGTGATGTCATTGGTTTTTACATTAATTNACCATTGGAAGAGGATGAT
ATCAATAAAGAAAAGATTAAAGAATTTCCAAATATTAATCAATTAGATATCTATGAAATG
ATTTCAAATGATTTATCATTACCATCCGATCAACCATTAACACCATTGAAAGGTAGTTTT
ATTCAATTCTTTAAGAATGGTCTTTCACC

>SHD187P.Seq
ACATATCCCATGATANATGAAAAACCCCACCAAAATCAACANCAAAGACAAGAATNNTGA
AAATACAGAACATCACCTAATCAATCAATTTGATAATAAAAACTNTGCTTCACTTTTGAA
TCAGAGTGGTAATTATCAAAATAGTATGAACAACAGCAACAACAACAACAATCAACAAAG
TTATAAAAGACAACACAGCGACACAAGCGATTCCGATTTAACCAGTA----------TAC
TCAAGGTGATATTTTTCATAATGCAAGATCCAAACCATATGGTGAANACTTATAAACAAG
GTGATGTCATTGGTTTTTACATTAATTNACCATTGGAAGAGGATGATATCAATAAAGAAA
AGATTAAAGAATTTCCAAATATTAATCAATTAGATATCTATGAAATGATTTCAAATGATT
TATCATTACCATCCGATCAACCATTAACACCATTGAAAGGTAGTTTTATTCAATTCTTTA
AGAATGGTCTTTCACC