NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHD184
Library SH
(Link to library)
Clone ID SHD184
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1
Original site URL
Representative seq. ID SHD184P
(Link to Original site)
Representative DNA sequence 
>SHD184 (SHD184Q) /CSM/SH/SHD1-D/SHD184Q.Seq.d/
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACACA
AGTTTTAAGATCAGCAGCACGTCATCAAAAGAXXXXXXXXXXCAGGTTATGTAGGTTATG
ATCAAGGTGGTCAATTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTG
ATGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAG
GTCGTCTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGA
CCTCAAATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACA
ACTCTTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTC
CAGAGTTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACC
TTCATAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATA
TGTCTTTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAA
TCTTTGGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTA
AACTCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATC
ATCATCTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAA
CCAAAAAACAAAAAACTATTAAATAAAAAAAAATAAAAAATAAATAAAATCTATNCTGTT
TTTTTAAAATTAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
ink**lkfayikeikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliqknllik
qiqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvlkdy*P
NNLFKIQYHLKFLQIHYFYTSFKISSTSSK---

---GYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVD
FSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIV
FTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIE
KNIVTELSKLILGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIK*kki
knk*nlxcffkik
Translated Amino Acid sequence (All Frames) 
Frame A:
ink**lkfayikeikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliqknllik
qiqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvlkdy*P
NNLFKIQYHLKFLQIHYFYTSFKISSTSSK---

---qvm*vmikvvn*lkpseedhtv*yclmklkklinkfgmfsykywmkvvlpmvkvep*
isqmllsl*pqi*vvntslvnkqtkkvvttlyhklvkikslmklenisvqsf*ivsmi*l
sllh*vkktfivlllfn*dpskrd*kikicl*rfqtml*iqlsmlhmiqslvvdh*nvtl
krilslnlvnsslvvn*kkikvllsmkkiiistlil*i*nnnnnvqllqpknkkllnkkk
*kinkiyxvflklk

Frame B:
linnn*nlhi*kk*kffifckhiifck*ii*ffnihiyiyifkik*nknvi*srriy**n
kynfvknsrigkrkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf*kiisq
ttcsksstt*nfskfiiftqvlrsaarhqk---

---rlcrl*srwsin*srqkktiqcsiv**s*kssstslecsltsig*rssyrwsr*nrr
flkccyhydlkfr*sihpw*tskqrrw*qlfitsl*r*sh**s*ktfpsrvfkssr*ync
lysie*rkps*yyyssikirrkeirrskyvfkdfkrcfrfnyqcci*snlww*tietlh*
keych*t**thpww*ikrksrcccq*krsssql*yyrfktttttssfsnqktkny*ikkn
kk*iksxlff*n*

Frame C:
**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*nkikmsfnpeeftdkt
ntillrtqelareksnvqlapihlavtllndednlaksifekaggdvpkidagfkrllak
qpvqnpvppeispnslflhkf*dqqhvikr---

---GYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVD
FSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIV
FTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIE
KNIVTELSKLILGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIK*kki
knk*nlxcffkik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK241 (VHK241Q) /CSM/VH/VHK2-B/VHK241Q.Seq.d/                       1348   0.0
VHI333 (VHI333Q) /CSM/VH/VHI3-B/VHI333Q.Seq.d/                       1348   0.0
SLA449 (SLA449Q) /CSM/SL/SLA4-C/SLA449Q.Seq.d/                       1348   0.0
SHL887 (SHL887Q) /CSM/SH/SHL8-D/SHL887Q.Seq.d/                       1348   0.0
SHL827 (SHL827Q) /CSM/SH/SHL8-B/SHL827Q.Seq.d/                       1348   0.0
SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/                       1348   0.0
SHL678 (SHL678Q) /CSM/SH/SHL6-D/SHL678Q.Seq.d/                       1348   0.0
SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/                       1348   0.0
SHL540 (SHL540Q) /CSM/SH/SHL5-B/SHL540Q.Seq.d/                       1348   0.0
SHL520 (SHL520Q) /CSM/SH/SHL5-A/SHL520Q.Seq.d/                       1348   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome.    62   2e-14  3
AE016746|AE016746.1 Staphylococcus epidermidis ATCC 12228, section 3 of 9 of the complete genome.    62   2e-14  3
AX145048|AX145048.1 Sequence 3770 from Patent WO0134809.           62   2e-14  3
AR485684|AR485684.1 Sequence 3770 from patent US 6703492.          62   2e-14  3
AF269730|AF269730.1 Staphylococcus epidermidis strain SR1 clone step.1020d12 genomic sequence.    62   2e-14  3
AX143829|AX143829.1 Sequence 2551 from Patent WO0134809.           62   3e-14  3
AR484857|AR484857.1 Sequence 2551 from patent US 6703492.          62   3e-14  3
CP000033|CP000033.1 Lactobacillus acidophilus NCFM, complete genome.    50   3e-13  3
BQ862449|BQ862449.1 QGC21B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC21B24, mRNA sequence.    80   1e-12  2
AX926714|AX926714.1 Sequence 4 from Patent WO03084989.             50   8e-09  2
dna update 2006. 1.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par...   218   3e-55
AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ...   217   6e-55
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par...   217   6e-55
(Q6F2Y7) RecName: Full=Heat shock protein 101;  &AC130611_3(AC13...   217   6e-55
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote...   217   7e-55
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par...   216   1e-54
L35272_1(L35272|pid:none) Glycine max heat shock protein (SB100)...   216   2e-54
CP000422_1040(CP000422|pid:none) Pediococcus pentosaceus ATCC 25...   216   2e-54
AF083327_1(AF083327|pid:none) Zea mays 101 kDa heat shock protei...   215   2e-54
BT066296_1(BT066296|pid:none) Zea mays full-length cDNA clone ZM...   215   2e-54
protein update 2009. 4.16
PSORT 

 psg: 0.71  gvh: 0.35  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.08
 nuc: 0.08  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for SHD184 is nuc
5' end seq. ID SHD184F
5' end seq. 
>SHD184F.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACACA
AGTTTTAAGATCAGCAGCACGTCATCAAAAGANNNNNNNNNN
Length of 5' end seq. 462
3' end seq. ID SHD184Z
3' end seq. 
>SHD184Z.Seq
NNNNNNNNNNCAGGTTATGTAGGTTATGATCAAGGTGGTCAATTAACTGAAGCCGTCAGA
AGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAACAAGTTTGG
AATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACCGTA
GATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATCCTTGGT
GAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGATAAAGTC
ATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGATATAATT
GTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTAAGATCC
GTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTTAGAT
TCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTACATT
GAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAAGAAAAT
CAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTAAAA
CAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAATAAAAAAAA
ATAAAAAATAAATAAAATCTATNCTGTTTTTTTAAAATTAAAA
Length of 3' end seq. 763
Connected seq. ID SHD184P
Connected seq. 
>SHD184P.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACACA
AGTTTTAAGATCAGCAGCACGTCATCAAAAGA----------CAGGTTATGTAGGTTATG
ATCAAGGTGGTCAATTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTG
ATGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAG
GTCGTCTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGA
CCTCAAATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACA
ACTCTTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTC
CAGAGTTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACC
TTCATAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATA
TGTCTTTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAA
TCTTTGGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTA
AACTCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATC
ATCATCTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAA
CCAAAAAACAAAAAACTATTAAATAAAAAAAAATAAAAAATAAATAAAATCTATNCTGTT
TTTTTAAAATTAAAA
Length of connected seq. 1205
Full length Seq ID -
Full length Seq. -
Length of full length seq. -