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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHD166
Library SH
(Link to library)
Clone ID SHD166
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1
Original site URL
Representative seq. ID SHD166P
(Link to Original site)
Representative DNA sequence 
>SHD166 (SHD166Q) /CSM/SH/SHD1-C/SHD166Q.Seq.d/
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACCAAAGAXXXXXXXXXXTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGT
CAATTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAA
AAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACC
GATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTA
GGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCA
CAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTA
AATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATT
ATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAG
ATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGT
AGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTT
GGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAAGAAAAAGATCATCATCTCAACT
TTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKT
NTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAK
QPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA
TK---

---GAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQG
RTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLD
DIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLK
RYIEKNIVTELSKLILGGKLKENQGVVVKKKIIISTLIL*i*nnnnnvqllqpkn
Translated Amino Acid sequence (All Frames) 
Frame A:
ink**lkfayikeikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliqknllik
qiqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvlkdy*p
nnlfkiqyhlkflqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyqywemlv
qpk---

---wcstrlcrl*srwsin*srqkktiqcsiv**s*kssstslecsltsig*rssyrwsr
*nrrflkccyhydlkfr*sihpw*tskqrrw*qlfitsl*r*sh**s*ktfpsrvfkssr
*ynclysie*rkps*yyyssikirrkeirrskyvfkdfkrcfrfnyqcci*snlww*tie
tlh*keych*t**thpww*ikrksrcccqekdhhlnfdiidlkqqqqrpasptkk

Frame B:
linnn*nlhi*kk*kffifckhiifck*ii*ffnihiyiyifkik*nknvi*srriy**n
kynfvknsrigkrkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf*kiisq
ttcsksstt*nfskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiisigrcwc
nqr---

---GAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQG
RTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLD
DIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLK
RYIEKNIVTELSKLILGGKLKENQGVVVKKKIIISTLIL*i*nnnnnvqllqpkn

Frame C:
**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKT
NTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAK
QPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA
TK---

---vlhqvm*vmikvvn*lkpseedhtv*yclmklkklinkfgmfsykywmkvvlpmvkv
ep*isqmllsl*pqi*vvntslvnkqtkkvvttlyhklvkikslmklenisvqsf*ivsm
i*lsllh*vkktfivlllfn*dpskrd*kikicl*rfqtml*iqlsmlhmiqslvvdh*n
vtlkrilslnlvnsslvvn*kkikvllsrkrsssql*yyrfktttttssfsnqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHD166 (SHD166Q) /CSM/SH/SHD1-C/SHD166Q.Seq.d/                       2141   0.0
SHL735 (SHL735Q) /CSM/SH/SHL7-B/SHL735Q.Seq.d/                       1382   0.0
SHK740 (SHK740Q) /CSM/SH/SHK7-B/SHK740Q.Seq.d/                       1382   0.0
SHK581 (SHK581Q) /CSM/SH/SHK5-D/SHK581Q.Seq.d/                       1382   0.0
SHJ671 (SHJ671Q) /CSM/SH/SHJ6-C/SHJ671Q.Seq.d/                       1382   0.0
SHG894 (SHG894Q) /CSM/SH/SHG8-D/SHG894Q.Seq.d/                       1382   0.0
SHG564 (SHG564Q) /CSM/SH/SHG5-C/SHG564Q.Seq.d/                       1382   0.0
SHG363 (SHG363Q) /CSM/SH/SHG3-C/SHG363Q.Seq.d/                       1382   0.0
SHG334 (SHG334Q) /CSM/SH/SHG3-B/SHG334Q.Seq.d/                       1382   0.0
SHD585 (SHD585Q) /CSM/SH/SHD5-D/SHD585Q.Seq.d/                       1382   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome.    68   4e-16  3
AE016746|AE016746.1 Staphylococcus epidermidis ATCC 12228, section 3 of 9 of the complete genome.    68   4e-16  3
AX145048|AX145048.1 Sequence 3770 from Patent WO0134809.           68   5e-16  3
AR485684|AR485684.1 Sequence 3770 from patent US 6703492.          68   5e-16  3
AF269730|AF269730.1 Staphylococcus epidermidis strain SR1 clone step.1020d12 genomic sequence.    68   5e-16  3
AX143829|AX143829.1 Sequence 2551 from Patent WO0134809.           68   5e-16  3
AR484857|AR484857.1 Sequence 2551 from patent US 6703492.          68   5e-16  3
CP000033|CP000033.1 Lactobacillus acidophilus NCFM, complete genome.    56   7e-14  3
BQ862449|BQ862449.1 QGC21B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC21B24, mRNA sequence.    80   1e-12  2
AL399818|AL399818.1 T7 end of clone AS0AA017F07 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    58   2e-11  4
dna update 2006. 1.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par...   242   2e-62
AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ...   241   3e-62
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote...   241   5e-62
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par...   239   1e-61
AF083327_1(AF083327|pid:none) Zea mays 101 kDa heat shock protei...   239   1e-61
BT066296_1(BT066296|pid:none) Zea mays full-length cDNA clone ZM...   239   1e-61
(Q6F2Y7) RecName: Full=Heat shock protein 101;  &AC130611_3(AC13...   239   1e-61
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par...   239   2e-61
L35272_1(L35272|pid:none) Glycine max heat shock protein (SB100)...   238   2e-61
CP000806_1939(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...   238   2e-61
protein update 2009. 4.16
PSORT 

 psg: 0.63  gvh: 0.36  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SHD166 is cyt
5' end seq. ID SHD166F
5' end seq. 
>SHD166F.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACCAAAGANNNNNNNNNN
Length of 5' end seq. 560
3' end seq. ID SHD166Z
3' end seq. 
>SHD166Z.Seq
NNNNNNNNNNTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGTCAATTAACTG
AAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATC
AACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAG
GTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAAT
ACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTA
AAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCG
ATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTC
AATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACG
ATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGA
AACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAAT
TAAAAGAAAATCAAGGTGTTGTTGTCAAGAAAAAGATCATCATCTCAACTTTGATATTAT
AGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAAC
Length of 3' end seq. 707
Connected seq. ID SHD166P
Connected seq. 
>SHD166P.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACCAAAGA----------TGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGT
CAATTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAA
AAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACC
GATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTA
GGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCA
CAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTA
AATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATT
ATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAG
ATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGT
AGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTT
GGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAAGAAAAAGATCATCATCTCAACT
TTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAAC
Length of connected seq. 1247
Full length Seq ID -
Full length Seq. -
Length of full length seq. -