SHD156
Library SH
(Link to library)
Clone ID SHD156
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHD156 (SHD156Q) /CSM/SH/SHD1-C/SHD156Q.Seq.d/
XXXXXXXXXXTGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAA
CGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGA
TTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACAT
GAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGG
TGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTC
CCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGG
TGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGCCGTAT
CGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCAC
CGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTG
GGCTTCAATTG
sequence update 2002. 9.10
Translated Amino Acid sequence
---DKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMR
GIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIGG
IYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWA
SI


Translated Amino Acid sequence (All Frames)
Frame A:
---gikmmp*tfglsvqkvtvpisssmspkvfni*mklkilslvlsngppkkvlfvmkt*
evsvsifmmspstlmpstevvvkssqllvvysmlln*lppqls*nqst**kllpqktllv
vftlysivvevlllvknavsvphyslskliyqy*npsvspliyvptlpvklshnvssiig
lql


Frame B:
---g*k*chehlvfrsrr*rcqsprqchqrcsife*n*rffrwcfpmghqrrccl**khe
rypfqsl*chpph*chpqrwwsnhpncssctlcc*inclpnslrtnllsrnycprkryww
yllctqss*rycyw*rtpyrfpiilcqssftsirilrfhr*ftfphcrssfptmclrslg
fn


Frame C:
---DKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMR
GIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIGG
IYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWA
SI


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHD156 (SHD156Q) /CSM/SH/SHD1-C/SHD156Q.Seq.d/ 1072 0.0
VHQ491 (VHQ491Q) /CSM/VH/VHQ4-D/VHQ491Q.Seq.d/ 1065 0.0
VHQ483 (VHQ483Q) /CSM/VH/VHQ4-D/VHQ483Q.Seq.d/ 1065 0.0
VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/ 1065 0.0
VHQ473 (VHQ473Q) /CSM/VH/VHQ4-D/VHQ473Q.Seq.d/ 1065 0.0
VHQ453 (VHQ453Q) /CSM/VH/VHQ4-C/VHQ453Q.Seq.d/ 1065 0.0
VHQ446 (VHQ446Q) /CSM/VH/VHQ4-B/VHQ446Q.Seq.d/ 1065 0.0
VHQ434 (VHQ434Q) /CSM/VH/VHQ4-B/VHQ434Q.Seq.d/ 1065 0.0
VHQ410 (VHQ410Q) /CSM/VH/VHQ4-A/VHQ410Q.Seq.d/ 1065 0.0
VHQ396 (VHQ396Q) /CSM/VH/VHQ3-D/VHQ396Q.Seq.d/ 1065 0.0

own update 2002.10.16
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 1025 0.0 1
AR550596|AR550596.1 Sequence 5727 from patent US 6747137. 78 9e-47 6
AF107286|AF107286.1 Candida albicans elongation factor 2 (EFT2) gene, partial cds. 78 4e-45 6
CZ289188|CZ289188.1 cp62f05.f Candida parapsilosis Random Genomic Library Candida parapsilosis genomic clone cp62f05, genomic survey sequence. 72 8e-45 7
AY497659|AY497659.1 Candida dubliniensis strain CBS 7987 translation elongation factor gene, partial cds. 78 9e-45 5
Y09664|Y09664.1 C.albicans EFT2 gene. 78 2e-44 6
CZ282959|CZ282959.1 cp27c04.f Candida parapsilosis Random Genomic Library Candida parapsilosis genomic clone cp27c04, genomic survey sequence. 72 2e-44 7
AF107289|AF107289.1 Candida tropicalis elongation factor 2 (EFT2) gene, partial cds. 70 8e-43 6
AF107291|AF107291.1 Candida parapsilosis elongation factor 2 (EFT2) gene, partial cds. 72 1e-41 7
AY497652|AY497652.1 Candida parapsilosis strain CBS 604 translation elongation factor gene, partial cds. 72 2e-39 6
dna update 2006. 1.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 264 1e-69
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 263 3e-69
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 263 3e-69
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 262 5e-69
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 261 8e-69
BC063919_1(BC063919|pid:none) Xenopus tropicalis eukaryotic tran... 261 8e-69
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 261 1e-68
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280... 261 1e-68
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 258 9e-68
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 258 9e-68
protein update 2009. 5.28
PSORT

psg: 0.75 gvh: 0.38 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.07 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: vesicles of secretory system
4.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for SHD156 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHD156Z
3' end seq.
>SHD156Z.Seq
NNNNNNNNNNTGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAA
CGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGA
TTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACAT
GAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGG
TGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTC
CCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGG
TGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGCCGTAT
CGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCAC
CGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTG
GGCTTCAATTG
Length of 3' end seq. 551
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -