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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHD146
Library SH
(Link to library)
Clone ID SHD146
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1
Original site URL
Representative seq. ID SHD146P
(Link to Original site)
Representative DNA sequence 
>SHD146 (SHD146Q) /CSM/SH/SHD1-B/SHD146Q.Seq.d/
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACXXXXXXXXXXTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGT
CAATTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAA
AAAGCTCATCAACAAGTTTGGAATGTTCTNTTACAAGTATTGGATGAAGGTCGTNTTACC
GATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTA
GGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTNTTTATCA
CAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTA
AATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATT
ATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAG
ATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGT
AGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTT
GGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAAC
TTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAA
AAAACTATTAAATAAAAAAAAAATAAAAAATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKT
NTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAK
QPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA
---

---LIGAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRXTDG
QGRTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNXLSQACKDKVIDEVRKHFRPEFLNR
LDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRP
LKRYIEKNIVTELSKLILGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKT
IK*kknkk*
Translated Amino Acid sequence (All Frames) 
Frame A:
ink**lkfayikeikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliqknllik
qiqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlvlkdy*p
nnlfkiqyhlkflqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyqywemlv
q---

---fnwcstrlcrl*srwsin*srqkktiqcsiv**s*kssstslecsxtsig*rsxyrw
sr*nrrflkccyhydlkfr*sihpw*tskqrrw*qlfitsl*r*sh**s*ktfpsrvfks
sr*ynclysie*rkps*yyyssikirrkeirrskyvfkdfkrcfrfnyqcci*snlww*t
ietlh*keych*t**thpww*ikrksrcccq*krsssql*yyrfktttttssfsnqktkn
y*ikkk*ki

Frame B:
linnn*nlhi*kk*kffifckhiifck*ii*ffnihiyiyifkik*nknvi*srriy**n
kynfvknsrigkrkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf*kiisq
ttcsksstt*nfskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiisigrcwc
n---

---LIGAPPGYVGYDQGGQLTEAVRRRPYSVVLFDEVEKAHQQVWNVLLQVLDEGRXTDG
QGRTVDFSNVVIIMTSNLGSQYILGEQANKEGGNNXLSQACKDKVIDEVRKHFRPEFLNR
LDDIIVFTPLSKENLHSIITLQLRSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRP
LKRYIEKNIVTELSKLILGGKLKENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKT
IK*kknkk*

Frame C:
**iiikiciykrnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPEEFTDKT
NTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAK
QPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA
---

---*lvlhqvm*vmikvvn*lkpseedhtv*yclmklkklinkfgmfxykywmkvvlpmv
kvep*isqmllsl*pqi*vvntslvnkqtkkvvttxyhklvkikslmklenisvqsf*iv
smi*lsllh*vkktfivlllfn*dpskrd*kikicl*rfqtml*iqlsmlhmiqslvvdh
*nvtlkrilslnlvnsslvvn*kkikvllsmkkiiistlil*i*nnnnnvqllqpknkkl
lnkkkikn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK241 (VHK241Q) /CSM/VH/VHK2-B/VHK241Q.Seq.d/                       1364   0.0
VHI333 (VHI333Q) /CSM/VH/VHI3-B/VHI333Q.Seq.d/                       1364   0.0
SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/                       1364   0.0
SHL678 (SHL678Q) /CSM/SH/SHL6-D/SHL678Q.Seq.d/                       1364   0.0
SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/                       1364   0.0
SHL540 (SHL540Q) /CSM/SH/SHL5-B/SHL540Q.Seq.d/                       1364   0.0
SHL520 (SHL520Q) /CSM/SH/SHL5-A/SHL520Q.Seq.d/                       1364   0.0
SHK749 (SHK749Q) /CSM/SH/SHK7-C/SHK749Q.Seq.d/                       1364   0.0
SHK741 (SHK741Q) /CSM/SH/SHK7-B/SHK741Q.Seq.d/                       1364   0.0
SHK668 (SHK668Q) /CSM/SH/SHK6-C/SHK668Q.Seq.d/                       1364   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome.    80   7e-18  3
AE016746|AE016746.1 Staphylococcus epidermidis ATCC 12228, section 3 of 9 of the complete genome.    80   8e-18  3
AX145048|AX145048.1 Sequence 3770 from Patent WO0134809.           80   9e-18  3
AR485684|AR485684.1 Sequence 3770 from patent US 6703492.          80   9e-18  3
AF269730|AF269730.1 Staphylococcus epidermidis strain SR1 clone step.1020d12 genomic sequence.    80   9e-18  3
AX143829|AX143829.1 Sequence 2551 from Patent WO0134809.           80   9e-18  3
AR484857|AR484857.1 Sequence 2551 from patent US 6703492.          80   9e-18  3
AE017161|AE017161.1 Prochlorococcus marinus subsp. marinus str. CCMP1375 section 1 of 6 of the complete genome.    66   6e-15  3
AL399818|AL399818.1 T7 end of clone AS0AA017F07 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    58   4e-13  4
BQ862449|BQ862449.1 QGC21B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC21B24, mRNA sequence.    80   1e-12  2
dna update 2006. 1.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ...   247   7e-64
CP000806_3217(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...   245   3e-63
AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par...   244   4e-63
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par...   244   6e-63
L35272_1(L35272|pid:none) Glycine max heat shock protein (SB100)...   244   6e-63
(Q6F2Y7) RecName: Full=Heat shock protein 101;  &AC130611_3(AC13...   244   6e-63
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote...   243   8e-63
CP000806_1939(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...   243   8e-63
AF174433_1(AF174433|pid:none) Triticum aestivum heat shock prote...   243   1e-62
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par...   243   1e-62
protein update 2009. 4.16
PSORT 

 psg: 0.63  gvh: 0.36  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SHD146 is cyt
5' end seq. ID SHD146F
5' end seq. 
>SHD146F.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAACNNNNNNNNNN
Length of 5' end seq. 554
3' end seq. ID SHD146Z
3' end seq. 
>SHD146Z.Seq
NNNNNNNNNNTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGTCAAT
TAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAG
CTCATCAACAAGTTTGGAATGTTCTNTTACAAGTATTGGATGAAGGTCGTNTTACCGATG
GTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTA
GTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTNTTTATCACAAG
CTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATC
GTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTA
CTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTT
CAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGAC
CATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTG
GTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTG
ATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAA
CTATTAAATAAAAAAAAAATAAAAAATAA
Length of 3' end seq. 749
Connected seq. ID SHD146P
Connected seq. 
>SHD146P.Seq
ATTAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG
TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA
TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA
CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG
CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT
TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA
AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG
TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC
ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG
CAAC----------TTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGATCAAGGTGGT
CAATTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAA
AAAGCTCATCAACAAGTTTGGAATGTTCTNTTACAAGTATTGGATGAAGGTCGTNTTACC
GATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTA
GGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTNTTTATCA
CAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTA
AATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATT
ATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAG
ATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGT
AGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTT
GGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAAC
TTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAA
AAAACTATTAAATAAAAAAAAAATAAAAAATAA
Length of connected seq. 1283
Full length Seq ID -
Full length Seq. -
Length of full length seq. -