SHD121
Library SH
(Link to library)
Clone ID SHD121
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16573-1
Original site URL
Representative seq. ID SHD121P
(Link to Original site)
Representative DNA sequence
>SHD121 (SHD121Q) /CSM/SH/SHD1-A/SHD121Q.Seq.d/
AGGAAATCAACTAATATATTATTTTACTAATTACTATATAAATATATTAATTGAATTTAA
TTATTGTTTGGTTAGATTTTTTTTTAATATCTTAATATTTAAAGAAAAAAAAAAXXXXXX
XXXXAGATGGGGTCGATNGCGTCATTGGCGATGGATNCNCACAAGAAGAAAATGAAAAAT
TAGAAAAAGAAGAAAAAGAGAGAATAGAAAAAGAATTANACTGATAAAAAAGAAAAAGAA
GAAAAAGAATTGGCTGATAAATTAGAGAAAGAACGTCAAGAGAAAGAGTTGGCTGATAAA
CTTGAAAAGGAGAAAAAAGAAAAAGAAGAAAAAGAATTGGCTGATAAACTTGAAAAGGAA
CGTTTAGATAAAGAAT
sequence update 2002.10.25
Translated Amino Acid sequence
GNQLIYYFTNYYINILIEFNYCLVRFFFNILIFKEKK---

---DGVDXVIGDGXXQEENEKLEKEEKERIEKELX**krkrrkrig**irertsrervg*
*t*kgekrkrrkrig**t*kgtfr*r


Translated Amino Acid sequence (All Frames)
Frame A:
rkstnilfy*llykyin*i*llfg*iff*ylni*rkkk---

---rwgrxrhwrwxxtrrk*kirkrrkrenrkrixlikkkkkkknwlin*rknvkrkswl
inlkrrkkkkkkknwlinlkrnv*ikn

Frame B:
GNQLIYYFTNYYINILIEFNYCLVRFFFNILIFKEKK---

---DGVDXVIGDGXXQEENEKLEKEEKERIEKELX**krkrrkrig**irertsrervg*
*t*kgekrkrrkrig**t*kgtfr*r

Frame C:
ein*yiilliti*iy*lnliivwldfflis*ylkkkk---

---mgsxaslamdxhkkkmkn*kkkkkre*kknxtdkkekeekeladklekerqekelad
klekekkekeekeladklekerldke

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLI863 (SLI863Q) /CSM/SL/SLI8-C/SLI863Q.Seq.d/ 113 2e-24
SLG607 (SLG607Q) /CSM/SL/SLG6-A/SLG607Q.Seq.d/ 113 2e-24
SHI390 (SHI390Q) /CSM/SH/SHI3-D/SHI390Q.Seq.d/ 113 2e-24
SHD121 (SHD121Q) /CSM/SH/SHD1-A/SHD121Q.Seq.d/ 113 2e-24
SFJ180 (SFJ180Q) /CSM/SF/SFJ1-D/SFJ180Q.Seq.d/ 113 2e-24
CHM364 (CHM364Q) /CSM/CH/CHM3-C/CHM364Q.Seq.d/ 113 2e-24
AFO657 (AFO657Q) /CSM/AF/AFO6-C/AFO657Q.Seq.d/ 113 2e-24
AFN217 (AFN217Q) /CSM/AF/AFN2-A/AFN217Q.Seq.d/ 113 2e-24
SLH324 (SLH324Q) /CSM/SL/SLH3-A/SLH324Q.Seq.d/ 105 5e-22
SLK675 (SLK675Q) /CSM/SL/SLK6-D/SLK675Q.Seq.d/ 92 7e-18

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL137222|AL137222.17 Human DNA sequence from clone RP1-209B5 on chromosome 6 Contains the 5' end of the AKAP7 gene for A kinase (PRKA) anchor protein 7, a zinc finger pseudogene and a CpG island. 40 0.37 3
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 40 0.45 3
AC093043|AC093043.6 Mus Musculus Strain C57BL6/J Chromosome 14 BAC, RP23-337O1, complete sequence. 46 0.52 1
AC093022|AC093022.4 Mus Musculus Chromosome 14 Strain C57Bl6/J Clone RP23-297E8, complete sequence. 46 0.52 1
Z49888|Z49888.1 Caenorhabditis elegans Cosmid F47A4. 42 5.7 2
BF299070|BF299070.1 065PbF11 Pb cDNA #20, Charles Yowell and Jane Carlton Plasmodium berghei cDNA 5', mRNA sequence. 42 8.2 1
BF298006|BF298006.1 059PbB02 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence. 42 8.2 1
BF297853|BF297853.1 057PbB01 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence. 42 8.2 1
BF296019|BF296019.1 032PbH08 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence. 42 8.2 1
BF295814|BF295814.1 028PbF06 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence. 42 8.2 1
dna update 2006. 1.27
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 205,623,535
protein update 2009. 4.16
PSORT

psg: 0.79 gvh: 0.28 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for SHD121 is cyt

5' end seq. ID SHD121F
5' end seq.
>SHD121F.Seq
AGGAAATCAACTAATATATTATTTTACTAATTACTATATAAATATATTAATTGAATTTAA
TTATTGTTTGGTTAGATTTTTTTTTAATATCTTAATATTTAAAGAAAAAAAAAANNNNNN
NNNN
Length of 5' end seq. 124
3' end seq. ID SHD121Z
3' end seq.
>SHD121Z.Seq
NNNNNNNNNNAGATGGGGTCGATNGCGTCATTGGCGATGGATNCNCACAAGAAGAAAATG
AAAAATTAGAAAAAGAAGAAAAAGAGAGAATAGAAAAAGAATTANACTGATAAAAAAGAA
AAAGAAGAAAAAGAATTGGCTGATAAATTAGAGAAAGAACGTCAAGAGAAAGAGTTGGCT
GATAAACTTGAAAAGGAGAAAAAAGAAAAAGAAGAAAAAGAATTGGCTGATAAACTTGAA
AAGGAACGTTTAGATAAAGAAT
Length of 3' end seq. 262
Connected seq. ID SHD121P
Connected seq.
>SHD121P.Seq
AGGAAATCAACTAATATATTATTTTACTAATTACTATATAAATATATTAATTGAATTTAA
TTATTGTTTGGTTAGATTTTTTTTTAATATCTTAATATTTAAAGAAAAAAAAAA------
----AGATGGGGTCGATNGCGTCATTGGCGATGGATNCNCACAAGAAGAAAATGAAAAAT
TAGAAAAAGAAGAAAAAGAGAGAATAGAAAAAGAATTANACTGATAAAAAAGAAAAAGAA
GAAAAAGAATTGGCTGATAAATTAGAGAAAGAACGTCAAGAGAAAGAGTTGGCTGATAAA
CTTGAAAAGGAGAAAAAAGAAAAAGAAGAAAAAGAATTGGCTGATAAACTTGAAAAGGAA
CGTTTAGATAAAGAAT
Length of connected seq. 366
Full length Seq ID -
Full length Seq. -
Length of full length seq. -