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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHC883
Library SH
(Link to library)
Clone ID SHC883
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12151-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHC883 (SHC883Q) /CSM/SH/SHC8-D/SHC883Q.Seq.d/
XXXXXXXXXXANATTAATGTCCAATTCNAGNGGNGGTGNTCATACCCCNATNAAATGGGA
TGATANAACCCCATGNNCGGAGATTCATGTTCCAANTCAACNGGTTGTGTCCCATCCCCC
AATGAATGTNGATGATAATAATGCCTGTACNGAAGATAAATGTACTCAAAATGGNGGTGT
TACTCATACTCCCAATTAGTTGTGATGATTTAAAATTCATGTACNGGTGATTCATGTTCA
AATTCANCCGGTTGTGTCCACACTCCAATTNATTGNGATGATAATAATNNATGTACTGCT
GACTCATGTTCAAACTCAACTGGCTGTTGTCACACCCCAATTTCATGTGATGATAATAAT
CCATGTACCGTAGATTCCTGTTCAAATTCAACTGGTTGTTGTCACACTCCAATCAATGTT
GATGATAATAATCCATGTACCGAAGATAAATGTACTCAATCAGGTGGTGTAACTCATACT
CCAATTGGATGTAATGATAATAATGCATGTACTGTAGATTCATGTTCAAATTCAACTGGT
TGTACTCATACACCAATGAAATGTGATGATAATAATCCATGTACAATTGACTCATGTTCA
AATTCAACTGGTTGTGTCCATACCCCAATGAATTGCGACGATGGTAACTTCTGTACTCTT
GATTCATGTTGTTCAACTGGTTGTACTCATACACCAATTATTATTGATGACAATAACCCA
TGTACAGTCGACTCTTGTTGCAATTCAACCGGTGTCGTCCATACTCCAGTGGATTGTAAT
GATAACAATGTCCTTACTTGTGATTACTGCAGTATCAAACA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---invqfxxxxsypxxmg*xnpmxgdscsxstgcvpspnecx***clyxr*myskwxcy
sysqlvvmi*NSCTGDSCSNSXGCVHTPIXXDDNNXCTADSCSNSTGCCHTPISCDDNNP
CTVDSCSNSTGCCHTPINVDDNNPCTEDKCTQSGGVTHTPIGCNDNNACTVDSCSNSTGC
THTPMKCDDNNPCTIDSCSNSTGCVHTPMNCDDGNFCTLDSCCSTGCTHTPIIIDDNNPC
TVDSCCNSTGVVHTPVDCNDNNVLTCDYCSIK
Translated Amino Acid sequence (All Frames) 
Frame A:
---x*cpixxxvxipxxngmixphxrrfmfqxnxlcpipq*mxmiimpvxkinvlkmxvl
lilpiscddlkfmyx*fmfkfxrlcphsnxlx***xmyc*lmfklnwllshpnfm****s
myrrflfkfnwllshsnqc****smyrr*mysirwcnsysnwm****cmycrfmfkfnwl
ysytnem****smyn*lmfkfnwlcpypnelrrw*llys*fmlfnwlysytnyy**q*pm
ysrlllqfnrcrpyssgl***qcpyl*llqyqt


Frame B:
---invqfxxxxsypxxmg*xnpmxgdscsxstgcvpspnecx***clyxr*myskwxcy
sysqlvvmi*NSCTGDSCSNSXGCVHTPIXXDDNNXCTADSCSNSTGCCHTPISCDDNNP
CTVDSCSNSTGCCHTPINVDDNNPCTEDKCTQSGGVTHTPIGCNDNNACTVDSCSNSTGC
THTPMKCDDNNPCTIDSCSNSTGCVHTPMNCDDGNFCTLDSCCSTGCTHTPIIIDDNNPC
TVDSCCNSTGVVHTPVDCNDNNVLTCDYCSIK


Frame C:
---lmsnsxggxhtpxkwddxtpxxeihvpxqxvvshppmnvddnnactedkctqnggvt
htpn*l**fkihvxvihvqixpvvstlqxixmiixxvllthvqtqlavvtpqfhvmiiih
vp*ipvqiqlvvvtlqsmlmiiihvpkinvlnqvv*lilqldvmiimhvl*ihvqiqlvv
lihq*nvmiiihvqlthvqiqlvvsipq*iatmvtsvllihvvqlvvlihqlllmtithv
qstlvaiqpvssilqwivmitmsllvitavsn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHC883 (SHC883Q) /CSM/SH/SHC8-D/SHC883Q.Seq.d/                       1485   0.0
SHL392 (SHL392Q) /CSM/SH/SHL3-D/SHL392Q.Seq.d/                       1294   0.0
CFG520 (CFG520Q) /CSM/CF/CFG5-A/CFG520Q.Seq.d/                       1289   0.0
SHJ863 (SHJ863Q) /CSM/SH/SHJ8-C/SHJ863Q.Seq.d/                       1277   0.0
SHJ687 (SHJ687Q) /CSM/SH/SHJ6-D/SHJ687Q.Seq.d/                       1263   0.0
CHL417 (CHL417Q) /CSM/CH/CHL4-A/CHL417Q.Seq.d/                       1203   0.0
CHG260 (CHG260Q) /CSM/CH/CHG2-C/CHG260Q.Seq.d/                       1201   0.0
CHL693 (CHL693Q) /CSM/CH/CHL6-D/CHL693Q.Seq.d/                       1195   0.0
CHR658 (CHR658Q) /CSM/CH/CHR6-C/CHR658Q.Seq.d/                       1181   0.0
CHI627 (CHI627Q) /CSM/CH/CHI6-B/CHI627Q.Seq.d/                       1150   0.0
own update 2002.12. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X78948|X78948.1 D.minutum ecmB gene.                               78   5e-23  7
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    64   6e-09  2
AF134662|AF134662.1 Plasmodium falciparum strain UPV4 from Burkina Faso CG2 omega repeat (cg2) gene, partial cds.    28   0.019  4
AF134664|AF134664.1 Plasmodium falciparum strain IVC17 from Cote d' Ivoire CG2 omega repeat (cg2) gene, partial cds.    28   0.024  4
AF134659|AF134659.1 Plasmodium falciparum strain BEN6 from Benin CG2 omega repeat (cg2) gene, partial cds.    28   0.024  4
AF134658|AF134658.1 Plasmodium falciparum strain SEN16 from Senegal CG2 omega repeat (cg2) gene, partial cds.    28   0.027  4
AF134671|AF134671.1 Plasmodium falciparum strain TOG1 from Togo CG2 omega repeat (cg2) gene, partial cds.    28   0.029  4
AF134670|AF134670.1 Plasmodium falciparum strain SEN10 from Senegal CG2 omega repeat (cg2) gene, partial cds.    28   0.029  4
AF134672|AF134672.1 Plasmodium falciparum strain HAI1 from Haiti CG2 omega repeat (cg2) gene, partial cds.    28   0.031  4
AF134676|AF134676.1 Plasmodium falciparum strain CAE6 from Cameroon CG2 omega repeat (cg2) gene, partial cds.    28   0.034  4
dna update 2006. 1.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...   467   e-130
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...   467   e-130
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...   313   3e-84
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...   291   3e-79
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...   278   2e-73
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...   262   1e-68
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                144   4e-33
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                133   8e-30
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                130   4e-29
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                122   2e-26
protein update 2009. 5.28
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial

>> prediction for SHC883 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHC883Z
3' end seq. 
>SHC883Z.Seq
NNNNNNNNNNANATTAATGTCCAATTCNAGNGGNGGTGNTCATACCCCNATNAAATGGGA
TGATANAACCCCATGNNCGGAGATTCATGTTCCAANTCAACNGGTTGTGTCCCATCCCCC
AATGAATGTNGATGATAATAATGCCTGTACNGAAGATAAATGTACTCAAAATGGNGGTGT
TACTCATACTCCCAATTAGTTGTGATGATTTAAAATTCATGTACNGGTGATTCATGTTCA
AATTCANCCGGTTGTGTCCACACTCCAATTNATTGNGATGATAATAATNNATGTACTGCT
GACTCATGTTCAAACTCAACTGGCTGTTGTCACACCCCAATTTCATGTGATGATAATAAT
CCATGTACCGTAGATTCCTGTTCAAATTCAACTGGTTGTTGTCACACTCCAATCAATGTT
GATGATAATAATCCATGTACCGAAGATAAATGTACTCAATCAGGTGGTGTAACTCATACT
CCAATTGGATGTAATGATAATAATGCATGTACTGTAGATTCATGTTCAAATTCAACTGGT
TGTACTCATACACCAATGAAATGTGATGATAATAATCCATGTACAATTGACTCATGTTCA
AATTCAACTGGTTGTGTCCATACCCCAATGAATTGCGACGATGGTAACTTCTGTACTCTT
GATTCATGTTGTTCAACTGGTTGTACTCATACACCAATTATTATTGATGACAATAACCCA
TGTACAGTCGACTCTTGTTGCAATTCAACCGGTGTCGTCCATACTCCAGTGGATTGTAAT
GATAACAATGTCCTTACTTGTGATTACTGCAGTATCAAACA
Length of 3' end seq. 821
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -