NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHC702
Library SH
(Link to library)
Clone ID SHC702
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16405-1
Original site URL
Representative seq. ID SHC702P
(Link to Original site)
Representative DNA sequence 
>SHC702 (SHC702Q) /CSM/SH/SHC7-A/SHC702Q.Seq.d/
CACAAAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCTTTT
ATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAG
AAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCA
ACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTC
CCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCA
CCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGAT
GAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCA
AATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATAC
AATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCA
TATTTAAGATTATTTGGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACC
TTTTGXXXXXXXXXXTGATTCATCATCAGCCTCACCATGTTCAATACCATCATCAAATTC
TAGTTACTATGAAACAACATGTCCAACACCATACGGTACTGGTATTAATAAACAATTTAT
ATTCAAATTAAACTCAGAGACAGTCAGTGATCAATTCTCATATGCACCACCAGAAGTTGA
GAATCGTACAATTTCTGATGATGGAACTAATATTGAATTACACGGTAATAATTTTGGTAA
TTCAACATCATTAATTAAAGTTTATTTAAATGGTAGTGACATTTCATCAGAAATTCAAGA
ATTAGAAGATCATCAATTAACTATTAAAATATTGGATTCATATGAAAATGGCCCAATTAA
TATTACTGTAGATGGTAACTATATGGATTCATTATTTTATTTAACATTACCTCCTGTCAT
TTATCGTATAACAAATAAAGATAATAAAACACTTGCTTGTGGAGGTCTTATCACAGTTTC
TGGTAAGAATTTATTGACAAGTGACAAAGAATTCAAAGTTAATGTAAAATCAAATAATAA
AAATACCACAGTATTTGCTCAAGATGAAAAGATATTAATAGTTAGAGATGAAAGTAGAGA
GAGTTCACTCTTTGTTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATNACC
TATATAAAACCAANATTTCAGAAATTCCAACCA
sequence update 2002.10.25
Translated Amino Acid sequence 
tk*klnfpkiikflffnfll*kllksqiqnkknh**kwkrk*yy*fyfcslyqdiq*ilq
hq*mqymminhlh*flivishilpv*fciktkknpelkwhqiisivl*lmerdivysiqm
nhsqdygvv*tvryvleinqillrivhlmlrv*yiiqkyti*nivknqkhlvki*sllah
i*DYLGGPNFLINSIDVNKPF---

---DSSSASPCSIPSSNSSYYETTCPTPYGTGINKQFIFKLNSETVSDQFSYAPPEVENR
TISDDGTNIELHGNNFGNSTSLIKVYLNGSDISSEIQELEDHQLTIKILDSYENGPINIT
VDGNYMDSLFYLTLPPVIYRITNKDNKTLACGGLITVSGKNLLTSDKEFKVNVKSNNKNT
TVFAQDEKILIVRDESRESSLFVTTFIGVRSGPSTTXPI*nqxfrnsn
Translated Amino Acid sequence (All Frames) 
Frame A:
hkikikfs*nn*islf*fsfikiikkpnsk*kkslikmekkiillilflffisgysmnpp
tpidaiyddksftlifnsnlpystrlilyknekeprtemapnyfncslvdgerhclfhsd
epfsrlwgsidskvcvrdksntvedctfdasglvyypkvynlkyskkpktsgedivitgs
ylrlfgws*fpy*fh*ck*tf---

---*fiisltmfntiikf*ll*nnmsntirywy**tiyiqiklrdsq*silicttrs*es
ynf**wn*y*itr**fw*fniin*slfkw**hfirnsrirrssiny*nigfi*kwpn*yy
crw*lygfiilfnitschlsynk*r**ntclwrsyhsfw*efidk*qriqs*ckik**ky
hsicsr*kdins*r*k*reftlcynihwssfrtkynxtyikpxfqkfqp

Frame B:
tk*klnfpkiikflffnfll*kllksqiqnkknh**kwkrk*yy*fyfcslyqdiq*ilq
hq*mqymminhlh*flivishilpv*fciktkknpelkwhqiisivl*lmerdivysiqm
nhsqdygvv*tvryvleinqillrivhlmlrv*yiiqkyti*nivknqkhlvki*sllah
i*DYLGGPNFLINSIDVNKPF---

---DSSSASPCSIPSSNSSYYETTCPTPYGTGINKQFIFKLNSETVSDQFSYAPPEVENR
TISDDGTNIELHGNNFGNSTSLIKVYLNGSDISSEIQELEDHQLTIKILDSYENGPINIT
VDGNYMDSLFYLTLPPVIYRITNKDNKTLACGGLITVSGKNLLTSDKEFKVNVKSNNKNT
TVFAQDEKILIVRDESRESSLFVTTFIGVRSGPSTTXPI*nqxfrnsn

Frame C:
qnkn*iflk*lnfsfliffykny*kakfkikkiidkngkennitdfifvlyirifnessn
tnrcni***iiyinf***spifypfnfv*krkrtqn*ngtklfqlfss*wretlfipfr*
tilkimg*yrq*gmc*r*ikyc*glyi*cfgfsilsksiqfei**ktkniw*ryshywli
fkiiwvvlislliplm*inll---

---ihhqphhvqyhhqilvtmkqhvqhhtvlvlinnlysn*tqrqsvinshmhhqklriv
qflmmelilnytviilviqhh*lkfi*mvvtfhqkfkn*kiin*llkywihmkmaqlill
*mvtiwihyfi*hyllsfiv*qikiikhllvevlsqflvriy*qvtknsklm*nqiikip
qyllkmkry**lemkvervhsllqhslefvqdqvqhxlyktxiseipt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHC702 (SHC702Q) /CSM/SH/SHC7-A/SHC702Q.Seq.d/                       1485   0.0
AFL595 (AFL595Q) /CSM/AF/AFL5-D/AFL595Q.Seq.d/                       1318   0.0
AHK296 (AHK296Q) /CSM/AH/AHK2-D/AHK296Q.Seq.d/                       1239   0.0
AFN583 (AFN583Q) /CSM/AF/AFN5-D/AFN583Q.Seq.d/                       1078   0.0
AHM455 (AHM455Q) /CSM/AH/AHM4-C/AHM455Q.Seq.d/                        938   0.0
SSC234 (SSC234Q) /CSM/SS/SSC2-B/SSC234Q.Seq.d/                        819   0.0
AHD734 (AHD734Q) /CSM/AH/AHD7-B/AHD734Q.Seq.d/                        801   0.0
CFI487 (CFI487Q) /CSM/CF/CFI4-D/CFI487Q.Seq.d/                        789   0.0
SHK756 (SHK756Q) /CSM/SH/SHK7-C/SHK756Q.Seq.d/                        735   0.0
SHK652 (SHK652Q) /CSM/SH/SHK6-C/SHK652Q.Seq.d/                        735   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds.  1263   0.0    3
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.  1263   0.0    3
AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.   182   e-100  8
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   139   8e-63  9
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   0.004  15
AC094308|AC094308.10 Rattus norvegicus clone CH230-3G2, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50   0.12   1
CT025578|CT025578.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36   0.26   2
CT573049|CT573049.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-18H22.    36   0.26   2
BX255889|BX255889.7 Zebrafish DNA sequence from clone CH211-270O7 in linkage group 17.    36   0.26   2
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    38   0.30   13
dna update 2006. 1.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A54280(A54280) cell differentiation protein LagC precursor - sli...   366   e-100
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS...   362   2e-98
FJ374943_1(FJ374943|pid:none) Dictyostelium discoideum strain QS...   360   6e-98
FJ374945_1(FJ374945|pid:none) Dictyostelium discoideum strain QS...   360   6e-98
FJ374944_1(FJ374944|pid:none) Dictyostelium discoideum strain QS...   360   6e-98
FJ374949_1(FJ374949|pid:none) Dictyostelium discoideum strain QS...   360   6e-98
FJ374931_1(FJ374931|pid:none) Dictyostelium discoideum strain QS...   360   6e-98
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...   358   2e-97
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...   358   2e-97
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS...   356   1e-96
protein update 2009. 4.16
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.07  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for SHC702 is cyt
5' end seq. ID SHC702F
5' end seq. 
>SHC702F.Seq
CACAAAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCTTTT
ATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAG
AAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCA
ACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTC
CCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCA
CCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGAT
GAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCA
AATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATAC
AATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCA
TATTTAAGATTATTTGGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACC
TTTTGNNNNNNNNNN
Length of 5' end seq. 615
3' end seq. ID SHC702Z
3' end seq. 
>SHC702Z.Seq
NNNNNNNNNNTGATTCATCATCAGCCTCACCATGTTCAATACCATCATCAAATTCTAGTT
ACTATGAAACAACATGTCCAACACCATACGGTACTGGTATTAATAAACAATTTATATTCA
AATTAAACTCAGAGACAGTCAGTGATCAATTCTCATATGCACCACCAGAAGTTGAGAATC
GTACAATTTCTGATGATGGAACTAATATTGAATTACACGGTAATAATTTTGGTAATTCAA
CATCATTAATTAAAGTTTATTTAAATGGTAGTGACATTTCATCAGAAATTCAAGAATTAG
AAGATCATCAATTAACTATTAAAATATTGGATTCATATGAAAATGGCCCAATTAATATTA
CTGTAGATGGTAACTATATGGATTCATTATTTTATTTAACATTACCTCCTGTCATTTATC
GTATAACAAATAAAGATAATAAAACACTTGCTTGTGGAGGTCTTATCACAGTTTCTGGTA
AGAATTTATTGACAAGTGACAAAGAATTCAAAGTTAATGTAAAATCAAATAATAAAAATA
CCACAGTATTTGCTCAAGATGAAAAGATATTAATAGTTAGAGATGAAAGTAGAGAGAGTT
CACTCTTTGTTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATNACCTATAT
AAAACCAANATTTCAGAAATTCCAACCA
Length of 3' end seq. 688
Connected seq. ID SHC702P
Connected seq. 
>SHC702P.Seq
CACAAAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCTTTT
ATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAG
AAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCA
ACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTC
CCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCA
CCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGAT
GAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCA
AATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATAC
AATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCA
TATTTAAGATTATTTGGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACC
TTTTG----------TGATTCATCATCAGCCTCACCATGTTCAATACCATCATCAAATTC
TAGTTACTATGAAACAACATGTCCAACACCATACGGTACTGGTATTAATAAACAATTTAT
ATTCAAATTAAACTCAGAGACAGTCAGTGATCAATTCTCATATGCACCACCAGAAGTTGA
GAATCGTACAATTTCTGATGATGGAACTAATATTGAATTACACGGTAATAATTTTGGTAA
TTCAACATCATTAATTAAAGTTTATTTAAATGGTAGTGACATTTCATCAGAAATTCAAGA
ATTAGAAGATCATCAATTAACTATTAAAATATTGGATTCATATGAAAATGGCCCAATTAA
TATTACTGTAGATGGTAACTATATGGATTCATTATTTTATTTAACATTACCTCCTGTCAT
TTATCGTATAACAAATAAAGATAATAAAACACTTGCTTGTGGAGGTCTTATCACAGTTTC
TGGTAAGAATTTATTGACAAGTGACAAAGAATTCAAAGTTAATGTAAAATCAAATAATAA
AAATACCACAGTATTTGCTCAAGATGAAAAGATATTAATAGTTAGAGATGAAAGTAGAGA
GAGTTCACTCTTTGTTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATNACC
TATATAAAACCAANATTTCAGAAATTCCAACCA
Length of connected seq. 1283
Full length Seq ID -
Full length Seq. -
Length of full length seq. -