>SHC678 (SHC678Q) /CSM/SH/SHC6-D/SHC678Q.Seq.d/
XXXXXXXXXXTTGAAAAGATTGGTTATCCAGCAATTCTTAAATCAAATACTATGGGTTAT
GATGGTAAAGGTCAAGTTAAATTAACCGATCAAGTCGATCTTGAACAAGCTTGGAAAAAG
GTTACCTCTGAAACTTGTGCAACCAAAGCAATACTTGAACAATATATAGAGTTTGAATCA
GAAGCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAGAGTTAACCTTCCCATTGGTT
ACCAATAAACATCGTAATCATATTTTACGTCAAACCATTGCACCAGCTCAATTGCCAGAA
TATATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTGCTCGTTCCAATGGTTTGGTT
GGTATTATTGCCGTCGAATTATTTGTAGTGAAAAACAATGAAACAGGTCAATACTCTTTA
ATGGTAAATGAATTGGCACCAAGACCACACAATAGTGGTCATTGGACCATCGAAGGTTGT
GTAACCTCTCAATTTGAACAATTGATTCGTTGTGTTTGTGGTTTGCCTTTGGGTTCAGTC
GATTTCACTAAACGTA

---EKIGYPAILKSNTMGYDGKGQVKLTDQVDLEQAWKKVTSETCATKAILEQYIEFESE
ASVIVARALDGTELTFPLVTNKHRNHILRQTIAPAQLPEYIHKQANEIGLKIARSNGLVG
IIAVELFVVKNNETGQYSLMVNELAPRPHNSGHWTIEGCVTSQFEQLIRCVCGLPLGSVD
FTKR

Frame A:
---*kdwlssns*ikyygl*w*rss*inrssrs*tslekgyl*nlcnqsnt*tiyrv*ir
sisycstcfrwnrvnlpigyq*ts*syftsnhctssiariys*tsq*nwfkdcsfqwfgw
yycrriicsekq*nrsilfngk*igtkttq*wsldhrrlcnlsi*tidslclwfafgfsr
fh*t


Frame B:
---EKIGYPAILKSNTMGYDGKGQVKLTDQVDLEQAWKKVTSETCATKAILEQYIEFESE
ASVIVARALDGTELTFPLVTNKHRNHILRQTIAPAQLPEYIHKQANEIGLKIARSNGLVG
IIAVELFVVKNNETGQYSLMVNELAPRPHNSGHWTIEGCVTSQFEQLIRCVCGLPLGSVD
FTKR


Frame C:
---krlviqqflnqilwvmmvkvkln*piksilnklgkrlplklvqpkqylnni*slnqk
hqll*hvl*meqs*pshwlpiniviifyvkplhqlncqnifinkpmklv*rllvpmvwlv
llpsnyl**ktmkqvntl*w*mnwhqdhtivvigpskvv*plnlnn*fvvfvvclwvqsi
slnv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHC678 (SHC678Q) /CSM/SH/SHC6-D/SHC678Q.Seq.d/                       1082   0.0
SFB103 (SFB103Q) /CSM/SF/SFB1-A/SFB103Q.Seq.d/                       1074   0.0
AHI390 (AHI390Q) /CSM/AH/AHI3-D/AHI390Q.Seq.d/                       1074   0.0
SHC207 (SHC207Q) /CSM/SH/SHC2-A/SHC207Q.Seq.d/                       1066   0.0
SFL170 (SFL170Q) /CSM/SF/SFL1-C/SFL170Q.Seq.d/                       1063   0.0
VHB561 (VHB561Q) /CSM/VH/VHB5-C/VHB561Q.Seq.d/                       1061   0.0
SSK605 (SSK605Q) /CSM/SS/SSK6-A/SSK605Q.Seq.d/                       1059   0.0
VHN643 (VHN643Q) /CSM/VH/VHN6-B/VHN643Q.Seq.d/                       1043   0.0
VHQ389 (VHQ389Q) /CSM/VH/VHQ3-D/VHQ389Q.Seq.d/                       1003   0.0
SFE842 (SFE842Q) /CSM/SF/SFE8-B/SFE842Q.Seq.d/                        961   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG043407|BG043407.1 su15b05.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID:sequence.    52   0.013  1
AC105930|AC105930.2 Magnaporthe grisea chromosome 7 clone 14G09, *** SEQUENCING IN PROGRESS ***.    44   3.1    1
AQ162563|AQ162563.1 mgxb0013B15r CUGI Rice Blast BAC Library Magnaporthe grisea genomic clone mgxb0013B15r, genomic survey sequence.    44   3.1    1
CW222532|CW222532.1 104_658_11202424_148_37183_064 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11202424, genomic survey sequence.    44   3.1    1
AE008692|AE008692.1 Zymomonas mobilis subsp. mobilis ZM4, complete genome.    32   4.7    2
AE003825|AE003825.3 Drosophila melanogaster chromosome 2R, section 25 of 74 of the complete sequence.    40   6.5    4
BW378472|BW378472.1 Ciona intestinalis cDNA, clone:cidg819b15, 3'end, single read.    30   7.6    2
BW180501|BW180501.1 Ciona intestinalis cDNA, clone:rciht019f18, 3' end, single read.    30   7.6    2
BW381671|BW381671.1 Ciona intestinalis cDNA, clone:cidg828f03, 3'end, single read.    30   7.6    2
BW151201|BW151201.1 Ciona intestinalis cDNA, clone:rcigd014m23, 3' end, single read.    30   7.7    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050060_1(AM050060|pid:none) Azospirillum brasilense partial pu...   166   3e-40
AP006627_1021(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c...   163   2e-39
CP001175_775(CP001175|pid:none) Listeria monocytogenes HCC23, co...   162   5e-39
AM263198_1792(AM263198|pid:none) Listeria welshimeri serovar 6b ...   161   9e-39
FM242711_1759(FM242711|pid:none) Listeria monocytogenes Clip8145...   161   9e-39
AL009126_674(AL009126|pid:none) Bacillus subtilis subsp. subtili...   160   3e-38
CU234118_1139(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl...   159   4e-38
CP000560_622(CP000560|pid:none) Bacillus amyloliquefaciens FZB42...   157   1e-37
AP009256_516(AP009256|pid:none) Bifidobacterium adolescentis ATC...   157   2e-37
AE017333_640(AE017333|pid:none) Bacillus licheniformis DSM 13, c...   157   2e-37

 psg: 0.68  gvh: 0.30  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SHC678 is cyt

>SHC678Z.Seq
NNNNNNNNNNTTGAAAAGATTGGTTATCCAGCAATTCTTAAATCAAATACTATGGGTTAT
GATGGTAAAGGTCAAGTTAAATTAACCGATCAAGTCGATCTTGAACAAGCTTGGAAAAAG
GTTACCTCTGAAACTTGTGCAACCAAAGCAATACTTGAACAATATATAGAGTTTGAATCA
GAAGCATCAGTTATTGTAGCACGTGCTTTAGATGGAACAGAGTTAACCTTCCCATTGGTT
ACCAATAAACATCGTAATCATATTTTACGTCAAACCATTGCACCAGCTCAATTGCCAGAA
TATATTCATAAACAAGCCAATGAAATTGGTTTAAAGATTGCTCGTTCCAATGGTTTGGTT
GGTATTATTGCCGTCGAATTATTTGTAGTGAAAAACAATGAAACAGGTCAATACTCTTTA
ATGGTAAATGAATTGGCACCAAGACCACACAATAGTGGTCATTGGACCATCGAAGGTTGT
GTAACCTCTCAATTTGAACAATTGATTCGTTGTGTTTGTGGTTTGCCTTTGGGTTCAGTC
GATTTCACTAAACGTA