>SHC655 (SHC655Q) /CSM/SH/SHC6-C/SHC655Q.Seq.d/
XXXXXXXXXXAATGGGCCNATTAGAANTCTTANTTGAAGAGAATNAAGAAGAACAANTTT
CNNATAANAATTTGCAACAACTTAATGAGAATGAAAATCAACAGCANCAACAAGGACAAC
AACAAGTTCAAGCAACAAATGTTGANCGACAAATCGTTGNACAACNTANAGTTATCAAAG
AATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCT
ACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATA
AACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTA
AAAATCAATTAAAAAATATTCNA

---MGXLEXLXEENXEEQXSXXNLQQLNENENQQXQQGQQQVQATNVXRQIVXQXXVIKE
FQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIK
NQLKNIX

Frame A:
---MGXLEXLXEENXEEQXSXXNLQQLNENENQQXQQGQQQVQATNVXRQIVXQXXVIKE
FQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIK
NQLKNIX


Frame B:
---wax*xsxlkrxkknxfxixicnnlmrmkinsxnkdnnkfkqqmlxdkslxnxxlskn
fkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklk
in*kif


Frame C:
---gpirxlx*rexrrtxfx*xfatt**e*kstaxtrtttsssnkc*xtnrxttxsyqri
sktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*k
sikkys

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHC655 (SHC655Q) /CSM/SH/SHC6-C/SHC655Q.Seq.d/                        658   0.0
SFB552 (SFB552Q) /CSM/SF/SFB5-C/SFB552Q.Seq.d/                        628   e-179
CHL874 (CHL874Q) /CSM/CH/CHL8-D/CHL874Q.Seq.d/                        626   e-179
VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        626   e-179
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        626   e-179
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        626   e-179
SLB365 (SLB365Q) /CSM/SL/SLB3-C/SLB365Q.Seq.d/                        626   e-179
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        626   e-179
SHL890 (SHL890Q) /CSM/SH/SHL8-D/SHL890Q.Seq.d/                        626   e-179
SHL879 (SHL879Q) /CSM/SH/SHL8-D/SHL879Q.Seq.d/                        626   e-179

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   626   e-176  1
AC155816|AC155816.3 Mus musculus BAC clone RP23-435J8 from chromosome 8, complete sequence.    40   0.094  4
AC155276|AC155276.3 Mus musculus BAC clone RP23-26E18 from chromosome 8, complete sequence.    40   0.13   4
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.13   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.13   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.13   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.13   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.13   1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence.    48   0.13   1
AC090712|AC090712.4 Mus musculus chromosome 6 clone RP23-230F22 strain C57BL6/J, complete sequence.    48   0.13   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   130   1e-29
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   1.0
(P47048) RecName: Full=Uncharacterized protein YJL049W;  &AY6926...    33   2.3
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   2.3
AP009049_1790(AP009049|pid:none) Clostridium kluyveri NBRC 12016...    33   3.0
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   3.0
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   3.0
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote...    33   3.0
CP000673_1992(CP000673|pid:none) Clostridium kluyveri DSM 555, c...    33   3.0
AE016819_111(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    33   3.9

 psg: 0.75  gvh: 0.26  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SHC655 is nuc

>SHC655Z.Seq
NNNNNNNNNNAATGGGCCNATTAGAANTCTTANTTGAAGAGAATNAAGAAGAACAANTTT
CNNATAANAATTTGCAACAACTTAATGAGAATGAAAATCAACAGCANCAACAAGGACAAC
AACAAGTTCAAGCAACAAATGTTGANCGACAAATCGTTGNACAACNTANAGTTATCAAAG
AATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCT
ACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATA
AACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTA
AAAATCAATTAAAAAATATTCNA