SHC632
Library SH
(Link to library)
Clone ID SHC632
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1
Original site URL
Representative seq. ID SHC632P
(Link to Original site)
Representative DNA sequence
>SHC632 (SHC632Q) /CSM/SH/SHC6-B/SHC632Q.Seq.d/
ATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTCA
AAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGCA
ACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAGA
AGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAAT
TTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAAT
TTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAGA
AACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAATC
ATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTATC
AGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGAT
CTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTGT
CTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTACACA
AAAATACTGCTTXXXXXXXXXXTAGATCATTTTAGACTTTTAATCACTCATATTGGTAAT
GCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATC
AAATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCC
CTCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCA
AATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAG
TTTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCC
TCAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCA
ATCGGTGCTGAAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATC
TTAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAA
TTGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAA
GAGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAA
sequence update 2002.10.25
Translated Amino Acid sequence
*ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIE
EALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKE
TAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASI
YQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSIITQKYC---

---DHFRLLITHIGNAMGYIRLVRSGGLHYCSNAIKFVPDLKKIPKFQDLTSKDALSPET
IQASTNLDSIIHNLSNNLSEGTEYFKMLVNVFATEFRNIANQHLKNFYIIVPALASNYID
HMINSKDKLFKKSKAIGAEALLFTDDGFAIGLAYILKLLDQNKDFDSLHWFDRIQLKCET
DQKRMLAEANAKGIKEDQNHLAIKKIQNFQQE


Translated Amino Acid sequence (All Frames)
Frame A:
ikneqpnlenghilfg**wsk*riyi*ci*rwfi*igwratin*t*sics*lcttnledr
rsir*nik*smgykyrssfnl**ts*tirfn*ig*n*s*nfq*snisilfnl*sn*nfkr
nsrk*ilftinsiwrdyr*iirr*ctn*sw*iitiyd*fisick*mlfin*kyy*sicid
lsitkeytytil*ecsftscllfnd*yifsinkfr*ynytkill---

---*iildf*slilvmlwvildwsdpvvytivvmlsnsyqt*krfqnski*pqkmpshlk
qfklvpiwiqsfiifqiiyqrvlntlrcw*tfslqsfeislini*risissylpwpqits
ii*sivkinslrnqkqsvlklyyslmmalqlvwlis*ny*ikikisilfigsivfn*nvk
likrecwlkqmqkvskrikii*qlkrfkisnk

Frame B:
*ktnnpi*KMATSYSANNGQNEEYTFDAFEDGSSKLVGEQQLTKLNQFAVDYAQQIWKIE
EALDETLNEVWDINIDPVSIYNKPHEQLDLIELVKTDHKIFNKVILVFSSICNQTRILKE
TAESKFYSPLTVFGEITGESSEGDVQIEVGKLLPFMIDLSAFVNRCYSLIRNIISQFASI
YQSQKNIHTQFFKNVHLQAVYYSMIDIFSVLINLDSIITQKYC---

---rsf*tfnhsyw*cygly*igqirwftll**cyqirtrlekdskiprfnlkrcplt*n
nss*yqfgfnhs*sfk*firgy*il*dvgkrfryrvskyr*stfkeflyhrtclglklhr
sydq**r*tl*eiksnrc*sfiih**wlcnwfglylkiirsk*rfrfsslvrsysiem*n
*skenvg*skckryqrgsksfsn*kdskfptr

Frame C:
kkrttqfrkwphpirlimvkmknihlmhlkmvhlnwlesnn*lnlinlqlimhnkfgr*k
kh*mkh*mkygi*i*iqfqfiinlmnn*i*lnwlkliikfsik*y*yslqfviklef*kk
qqkvnfihh*qylerlqvnhqkvmyklklvnyyhl*liyqhl*idvih*leillvnlhrs
inhkriyihnslrmfiyklsiiq*liyfqy**i*iv*lhknta---

---DHFRLLITHIGNAMGYIRLVRSGGLHYCSNAIKFVPDLKKIPKFQDLTSKDALSPET
IQASTNLDSIIHNLSNNLSEGTEYFKMLVNVFATEFRNIANQHLKNFYIIVPALASNYID
HMINSKDKLFKKSKAIGAEALLFTDDGFAIGLAYILKLLDQNKDFDSLHWFDRIQLKCET
DQKRMLAEANAKGIKEDQNHLAIKKIQNFQQE

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHC632 (SHC632Q) /CSM/SH/SHC6-B/SHC632Q.Seq.d/ 2539 0.0
VHQ112 (VHQ112Q) /CSM/VH/VHQ1-A/VHQ112Q.Seq.d/ 1316 0.0
VHP507 (VHP507Q) /CSM/VH/VHP5-A/VHP507Q.Seq.d/ 1316 0.0
VHA138 (VHA138Q) /CSM/VH/VHA1-B/VHA138Q.Seq.d/ 1316 0.0
SHL271 (SHL271Q) /CSM/SH/SHL2-C/SHL271Q.Seq.d/ 1316 0.0
SHK609 (SHK609Q) /CSM/SH/SHK6-A/SHK609Q.Seq.d/ 1316 0.0
SHE452 (SHE452Q) /CSM/SH/SHE4-C/SHE452Q.Seq.d/ 1316 0.0
SHD353 (SHD353Q) /CSM/SH/SHD3-C/SHD353Q.Seq.d/ 1316 0.0
SHC138 (SHC138Q) /CSM/SH/SHC1-B/SHC138Q.Seq.d/ 1316 0.0
SHB243 (SHB243Q) /CSM/SH/SHB2-B/SHB243Q.Seq.d/ 1316 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BU746157|BU746157.1 CH3#002_C07T7 Canine heart normalized cDNA Library in pBluescriptCanis familiaris cDNA clone CH3#002_C07 5', mRNA sequence. 38 6e-04 3
AC168241|AC168241.1 Bos taurus clone CH240-197K22, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces. 52 0.030 1
CR450713|CR450713.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 38 0.065 8
DN287505|DN287505.1 1241755 MARC 7BOV Bos taurus cDNA 3', mRNA sequence. 34 0.10 3
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome. 38 0.11 18
CR044130|CR044130.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP186g09. 50 0.12 1
CR023465|CR023465.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP421e10. 50 0.12 1
CR017539|CR017539.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19. 50 0.12 1
CR034434|CR034434.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP47e19. 50 0.12 1
CR103667|CR103667.1 Forward strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP142o16. 50 0.12 1
dna update 2006. 1. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54R74) RecName: Full=UPF0681 protein; 419 e-116
AB028956_1(AB028956|pid:none) Homo sapiens mRNA for KIAA1033 pro... 214 5e-54
BC143373_1(BC143373|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 214 5e-54
BC040936_1(BC040936|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 214 5e-54
BC020314_1(BC020314|pid:none) Mus musculus RIKEN cDNA A230046K03... 212 2e-53
(Q3UMB9) RecName: Full=UPF0681 protein KIAA1033; 212 2e-53
AK161247_1(AK161247|pid:none) Mus musculus adult male testis cDN... 212 2e-53
AK145000_1(AK145000|pid:none) Mus musculus mammary gland RCB-052... 212 2e-53
BC110850_1(BC110850|pid:none) Homo sapiens KIAA1033, mRNA (cDNA ... 165 3e-39
AX882617_1(AX882617|pid:none) Sequence 17522 from Patent EP10746... 154 5e-36
protein update 2009. 4.16
PSORT

psg: 0.79 gvh: 0.25 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for SHC632 is nuc

5' end seq. ID SHC632F
5' end seq.
>SHC632F.Seq
ATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTCA
AAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGCA
ACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAGA
AGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAAT
TTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAAT
TTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAGA
AACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAATC
ATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTATC
AGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGAT
CTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTGT
CTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTACACA
AAAATACTGCTTNNNNNNNNNN
Length of 5' end seq. 682
3' end seq. ID SHC632Z
3' end seq.
>SHC632Z.Seq
NNNNNNNNNNTAGATCATTTTAGACTTTTAATCACTCATATTGGTAATGCTATGGGTTAT
ATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATCAAATTCGTACCA
GACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCCCTCTCACCTGAA
ACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCAAATAATTTATCA
GAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAGTTTCGAAATATC
GCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCCTCAAATTACATC
GATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCAATCGGTGCTGAA
GCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATCTTAAAATTATTA
GATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAATTGAAATGTGAA
ACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAAGAGGATCAAAAT
CATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAA
Length of 3' end seq. 639
Connected seq. ID SHC632P
Connected seq.
>SHC632P.Seq
ATAAAAAACGAACAACCCAATTTAGAAAATGGCCACATCCTATTCGGCTAATAATGGTCA
AAATGAAGAATATACATTTGATGCATTTGAAGATGGTTCATCTAAATTGGTTGGAGAGCA
ACAATTAACTAAACTTAATCAATTTGCAGTTGATTATGCACAACAAATTTGGAAGATAGA
AGAAGCATTAGATGAAACATTAAATGAAGTATGGGATATAAATATAGATCCAGTTTCAAT
TTATAATAAACCTCATGAACAATTAGATTTAATTGAATTGGTTAAAACTGATCATAAAAT
TTTCAATAAAGTAATATTAGTATTCTCTTCAATTTGTAATCAAACTAGAATTTTAAAAGA
AACAGCAGAAAGTAAATTTTATTCACCATTAACAGTATTTGGAGAGATTACAGGTGAATC
ATCAGAAGGTGATGTACAAATTGAAGTTGGTAAATTATTACCATTTATGATTGATTTATC
AGCATTTGTAAATAGATGTTATTCATTAATTAGAAATATTATTAGTCAATTTGCATCGAT
CTATCAATCACAAAAGAATATACATACACAATTCTTTAAGAATGTTCATTTACAAGCTGT
CTATTATTCAATGATTGATATATTTTCAGTATTAATAAATTTAGATAGTATAATTACACA
AAAATACTGCTT----------TAGATCATTTTAGACTTTTAATCACTCATATTGGTAAT
GCTATGGGTTATATTAGATTGGTCAGATCCGGTGGTTTACACTATTGTAGTAATGCTATC
AAATTCGTACCAGACTTGAAAAAGATTCCAAAATTCCAAGATTTAACCTCAAAAGATGCC
CTCTCACCTGAAACAATTCAAGCTAGTACCAATTTGGATTCAATCATTCATAATCTTTCA
AATAATTTATCAGAGGGTACTGAATACTTTAAGATGTTGGTAAACGTTTTCGCTACAGAG
TTTCGAAATATCGCTAATCAACATTTAAAGAATTTCTATATCATCGTACCTGCCTTGGCC
TCAAATTACATCGATCATATGATCAATAGTAAAGATAAACTCTTTAAGAAATCAAAAGCA
ATCGGTGCTGAAGCTTTATTATTCACTGATGATGGCTTTGCAATTGGTTTGGCTTATATC
TTAAAATTATTAGATCAAAATAAAGATTTCGATTCTCTTCATTGGTTCGATCGTATTCAA
TTGAAATGTGAAACTGATCAAAAGAGAATGTTGGCTGAAGCAAATGCAAAAGGTATCAAA
GAGGATCAAAATCATTTAGCAATTAAAAAGATTCAAAATTTCCAACAAGAA
Length of connected seq. 1301
Full length Seq ID -
Full length Seq. -
Length of full length seq. -