SHC626
Library SH
(Link to library)
Clone ID SHC626
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHC626 (SHC626Q) /CSM/SH/SHC6-B/SHC626Q.Seq.d/
XXXXXXXXXXGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGA
TGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGA
GGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAA
GATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCAT
TGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGC
TGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAA
TGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAA
AAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGT
TCAAGCAACAAATGTTGAGCAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCA
AAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAG
TGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATA
sequence update 2002. 9.10
Translated Amino Acid sequence
---EIALENERLYLQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKI
VTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNE
MDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQR
QDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKN


Translated Amino Acid sequence (All Frames)
Frame A:
---lkll*rmkdfifkklkmlqrdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tlir
l*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykm
kwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlsnkslnnlklsknfk
dkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlki


Frame B:
---*ncfre*ktlssrs*rcsreti*rns*fqfe*sssrg*rn*kttkw*wftcckls*d
cnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*
ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*atnr*tt*syqrisk
trstketknstrercclle*c*ksst*igc*ig*k


Frame C:
---EIALENERLYLQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKI
VTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNE
MDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQR
QDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKN


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHD338 (SHD338Q) /CSM/SH/SHD3-B/SHD338Q.Seq.d/ 874 0.0
SHC626 (SHC626Q) /CSM/SH/SHC6-B/SHC626Q.Seq.d/ 874 0.0
SHB168 (SHB168Q) /CSM/SH/SHB1-C/SHB168Q.Seq.d/ 874 0.0
SHA745 (SHA745Q) /CSM/SH/SHA7-B/SHA745Q.Seq.d/ 874 0.0
SHA660 (SHA660Q) /CSM/SH/SHA6-C/SHA660Q.Seq.d/ 874 0.0
SHA585 (SHA585Q) /CSM/SH/SHA5-D/SHA585Q.Seq.d/ 874 0.0
SFG212 (SFG212Q) /CSM/SF/SFG2-A/SFG212Q.Seq.d/ 874 0.0
SFC806 (SFC806Q) /CSM/SF/SFC8-A/SFC806Q.Seq.d/ 874 0.0
CHR131 (CHR131Q) /CSM/CH/CHR1-B/CHR131Q.Seq.d/ 874 0.0
CHQ337 (CHQ337Q) /CSM/CH/CHQ3-B/CHQ337Q.Seq.d/ 874 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 874 0.0 2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 3e-25 1
DU863702|DU863702.1 85090 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0075E18 3, genomic survey sequence. 44 0.16 2
AL672188|AL672188.6 Mouse DNA sequence from clone RP23-53B2 on chromosome X. 36 0.20 5
AC165111|AC165111.1 Bos taurus clone CH240-164H19, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces. 42 0.21 2
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence. 48 0.23 1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence. 48 0.23 1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence. 48 0.23 1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence. 48 0.23 1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence. 48 0.23 1
dna update 2006. 1. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 276 3e-73
AF063866_46(AF063866|pid:none) Melanoplus sanguinipes entomopoxv... 39 0.13
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 39 0.13
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl... 39 0.13
(Q54DK4) RecName: Full=Alpha-protein kinase 1; Short=AK... 39 0.17
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l... 38 0.22
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr... 38 0.28
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei... 37 0.37
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al... 37 0.48
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 37 0.48
protein update 2009. 5.28
PSORT

psg: 0.75 gvh: 0.17 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.12 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for SHC626 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHC626Z
3' end seq.
>SHC626Z.Seq
NNNNNNNNNNGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGA
TGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGA
GGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAA
GATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCAT
TGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGC
TGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAA
TGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAA
AAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGT
TCAAGCAACAAATGTTGAGCAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCA
AAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAG
TGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATA
Length of 3' end seq. 650
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -