NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHC555
Library SH
(Link to library)
Clone ID SHC555
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHC555P
(Link to Original site)
Representative DNA sequence 
>SHC555 (SHC555Q) /CSM/SH/SHC5-C/SHC555Q.Seq.d/
AAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAA
TAATAGAAATAATAAAAATTAATGTTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXX
XXCAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGG
GAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATT
TACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTG
CCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAG
AACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTA
ATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTG
AACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAA
AGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTC
AACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATT
TAGTTCAAGAGAAACAACAATCTTCCTGACCAAATTAAAACATCAATTAAAAAATATTCA
AC
sequence update 2002.10.25
Translated Amino Acid sequence 
kiinllsnnyfffsfflkfk**k**KLMLKKRNVKKK---

---QQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQH
EVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQAT
NVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQD
ENLVQEKQQSS*pn*nin*kifn
Translated Amino Acid sequence (All Frames) 
Frame A:
kiinllsnnyfffsfflkfk**k**KLMLKKRNVKKK---

---QQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQH
EVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQAT
NVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQD
ENLVQEKQQSS*pn*nin*kifn

Frame B:
k**iyyqitifsflsf*slnnrnnkn*c*kkgtlkkk---

---nkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnm
klpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqq
mlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikm
ri*fkrnnnlpdqiktsikkys

Frame C:
nnkftik*lfflfflfkv*iieiikinvkkker*kk---

---tkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*
sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnk
c*ttnr*tt*syqrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*
efssrettifltklkhqlkniq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        617   e-175
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        617   e-175
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        617   e-175
SHL865 (SHL865Q) /CSM/SH/SHL8-C/SHL865Q.Seq.d/                        617   e-175
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        617   e-175
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        617   e-175
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        617   e-175
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        617   e-175
SHL767 (SHL767Q) /CSM/SH/SHL7-C/SHL767Q.Seq.d/                        617   e-175
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/                        617   e-175
own update 2002.10.16
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   617   0.0    6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   3e-25  1
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.26   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.26   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.26   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.26   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.26   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.26   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.26   1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence.    48   0.26   1
dna update 2006. 1. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   228   2e-58
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   1.7
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.7
protein update 2008.11.14
PSORT 

 psg: 0.51  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHC555 is nuc
5' end seq. ID SHC555F
5' end seq. 
>SHC555F.Seq
AAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAA
TAATAGAAATAATAAAAATTAATGTTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNN
NN
Length of 5' end seq. 122
3' end seq. ID SHC555Z
3' end seq. 
>SHC555Z.Seq
NNNNNNNNNNCAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAAC
TCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGC
TCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACA
TGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGA
CCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACA
ACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAAC
AAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGA
TCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGA
AAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGA
TGAGAATTTAGTTCAAGAGAAACAACAATCTTCCTGACCAAATTAAAACATCAATTAAAA
AATATTCAAC
Length of 3' end seq. 610
Connected seq. ID SHC555P
Connected seq. 
>SHC555P.Seq
AAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAA
TAATAGAAATAATAAAAATTAATGTTAAAAAAAAGGAACGTTAAAAAAAAAA--------
--CAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGG
GAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATT
TACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTG
CCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAG
AACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTA
ATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTG
AACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAA
AGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTC
AACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATT
TAGTTCAAGAGAAACAACAATCTTCCTGACCAAATTAAAACATCAATTAAAAAATATTCA
AC
Length of connected seq. 712
Full length Seq ID -
Full length Seq. -
Length of full length seq. -