>SHC526 (SHC526Q) /CSM/SH/SHC5-B/SHC526Q.Seq.d/
XXXXXXXXXXCATTGATTAAAAAGATTTACTCATCAAAAAAGTCTTGTGAAATTGATCCA
ACCAAATTGGAGAAGGGTGAGGATATTAAAAAGAATTGTAAGAATCTTTTAAGTTGGGTT
AAAAAGATGACTACTGCTATCCTCTCTAGTGTAAATAATTGTCCTGGCCCATTGAGAGAG
GTATTCAAATCCATTCAAGATAAAGTGGTTCAACGTTATCCAAAGGATGAAATCACACGT
TATACAGCCGTAAGTGGTTTCATTTTCCTTCGTTTCTTTTGTCCTGCAATTTTAGCTCCA
AAACTTTTCGATCTAATGCCAGATCATCCAGGCATTAAAACTACTCGTTCTCTCATTCTT
ATTGCAAAAACCTTACAAAATTTGGCAAATCAAGTAGAATTTGGTGAATACAAAGAAGAC
TTTATGAAAGATATGAATCGTTTCGTAATTGATAATATGGAAAATATGAAATCATTCATT
AATACTCTTTCAACAGTTCCTGCTGATTGTCCACCTGGTGCTTTACAATCACCAATCATA
CTGGAAAAAGAATTGGCTTGTCTATATCGTCATTTAATTAAACAACGTC

---LIKKIYSSKKSCEIDPTKLEKGEDIKKNCKNLLSWVKKMTTAILSSVNNCPGPLREV
FKSIQDKVVQRYPKDEITRYTAVSGFIFLRFFCPAILAPKLFDLMPDHPGIKTTRSLILI
AKTLQNLANQVEFGEYKEDFMKDMNRFVIDNMENMKSFINTLSTVPADCPPGALQSPIIL
EKELACLYRHLIKQR

Frame A:
---id*kdllikkvl*n*snqigeg*gy*kel*esfklg*kddycypl*ck*lswpierg
iqihsr*sgstlskg*nhtlysrkwfhfpsfllscnfssktfrsnarssrh*nysfshsy
cknltkfgkssriw*iqrrlyeryesfrn**ygkyeiih*ysfnssc*lstwcftitnht
gkriglsissfn*tt


Frame B:
---LIKKIYSSKKSCEIDPTKLEKGEDIKKNCKNLLSWVKKMTTAILSSVNNCPGPLREV
FKSIQDKVVQRYPKDEITRYTAVSGFIFLRFFCPAILAPKLFDLMPDHPGIKTTRSLILI
AKTLQNLANQVEFGEYKEDFMKDMNRFVIDNMENMKSFINTLSTVPADCPPGALQSPIIL
EKELACLYRHLIKQR


Frame C:
---*lkrfthqkslvkliqpnwrrvrilkrivrif*vglkr*lllsslv*iivlah*ery
snpfkikwfnviqrmkshviqp*vvsfsfvsfvlqf*lqnfsi*cqiiqalkllvlsfll
qkpykiwqik*nlvntkktl*ki*ivs*liiwki*nhslilfqqfllivhlvlynhqsyw
kknwlvyivi*lnnv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHG618 (SHG618Q) /CSM/SH/SHG6-A/SHG618Q.Seq.d/                       1148   0.0
SHC526 (SHC526Q) /CSM/SH/SHC5-B/SHC526Q.Seq.d/                       1148   0.0
AHM528 (AHM528Q) /CSM/AH/AHM5-B/AHM528Q.Seq.d/                       1148   0.0
AHI639 (AHI639Q) /CSM/AH/AHI6-B/AHI639Q.Seq.d/                       1148   0.0
AHE512 (AHE512Q) /CSM/AH/AHE5-A/AHE512Q.Seq.d/                       1148   0.0
VHK224 (VHK224Q) /CSM/VH/VHK2-A/VHK224Q.Seq.d/                       1142   0.0
SHA252 (SHA252Q) /CSM/SH/SHA2-C/SHA252Q.Seq.d/                       1140   0.0
CHL838 (CHL838Q) /CSM/CH/CHL8-B/CHL838Q.Seq.d/                       1136   0.0
CHI471 (CHI471Q) /CSM/CH/CHI4-C/CHI471Q.Seq.d/                       1110   0.0
CFJ181 (CFJ181Q) /CSM/CF/CFJ1-D/CFJ181Q.Seq.d/                       1065   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CG389607|CG389607.1 ZMMBBc0573A09r ZMMBBc Zea mays genomic clone ZMMBBc0573A09 3',genomic survey sequence.    50   0.052  1
BJ252255|BJ252255.1 Triticum aestivum cDNA clone:whf22g24, 3' end, single read.    44   3.2    1
CD453775|CD453775.1 WHE2108_D02_H04ZT CS wheat salt-stressed crown cDNA library Triticum aestivum cDNA clone WHE2108_D02_H04, mRNA sequence.    44   3.2    1
CA743719|CA743719.1 wri1s.pk005.b22 wri1s Triticum aestivum cDNA clone wri1s.pk005.b22 5' end, mRNA sequence.    44   3.2    1
CD923430|CD923430.1 G750.108G22F010530 G750 Triticum aestivum cDNA clone G750108G22, mRNA sequence.    44   3.2    1
BQ487459|BQ487459.1 WHE2108_D02_H04ZY Wheat salt-stressed crown cDNA library Triticum aestivum cDNA clone WHE2108_D02_H04, mRNA sequence.    44   3.2    1
BJ252255|BJ252255.1 Triticum aestivum cDNA clone:whf22g24, 3' end, single read.    44   3.2    1
AC115151|AC115151.4 Rattus norvegicus clone CH230-108E12, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44   3.2    1
AC006904|AC006904.2 Caenorhabditis elegans clone Y74C9, WORKING DRAFT SEQUENCE, 7 unordered pieces.    44   3.2    1
AC006900|AC006900.1 Caenorhabditis elegans clone Y73F10, WORKING DRAFT SEQUENCE, 12 unordered pieces.    44   3.2    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM270115_10(AM270115|pid:none) Aspergillus niger contig An06c009...   139   4e-32
AM920437_405(AM920437|pid:none) Penicillium chrysogenum Wisconsi...   134   1e-30
BX470189_3(BX470189|pid:none) Zebrafish DNA sequence from clone ...   129   6e-29
CR858268_1(CR858268|pid:none) Pongo abelii mRNA; cDNA DKFZp469B2...   128   1e-28
AK300269_1(AK300269|pid:none) Homo sapiens cDNA FLJ61389 complet...   127   2e-28
(P20936) RecName: Full=Ras GTPase-activating protein 1;         ...   127   2e-28
AK312739_1(AK312739|pid:none) Homo sapiens cDNA, FLJ93145, Homo ...   127   2e-28
AK161497_1(AK161497|pid:none) Mus musculus adult male testis cDN...   127   3e-28
AK133354_1(AK133354|pid:none) Mus musculus adult male testis cDN...   127   3e-28
(P09851) RecName: Full=Ras GTPase-activating protein 1;         ...   124   2e-27

 psg: 0.55  gvh: 0.38  alm: 0.30  top: 0.53  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	 16.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SHC526 is cyt

>SHC526Z.Seq
NNNNNNNNNNCATTGATTAAAAAGATTTACTCATCAAAAAAGTCTTGTGAAATTGATCCA
ACCAAATTGGAGAAGGGTGAGGATATTAAAAAGAATTGTAAGAATCTTTTAAGTTGGGTT
AAAAAGATGACTACTGCTATCCTCTCTAGTGTAAATAATTGTCCTGGCCCATTGAGAGAG
GTATTCAAATCCATTCAAGATAAAGTGGTTCAACGTTATCCAAAGGATGAAATCACACGT
TATACAGCCGTAAGTGGTTTCATTTTCCTTCGTTTCTTTTGTCCTGCAATTTTAGCTCCA
AAACTTTTCGATCTAATGCCAGATCATCCAGGCATTAAAACTACTCGTTCTCTCATTCTT
ATTGCAAAAACCTTACAAAATTTGGCAAATCAAGTAGAATTTGGTGAATACAAAGAAGAC
TTTATGAAAGATATGAATCGTTTCGTAATTGATAATATGGAAAATATGAAATCATTCATT
AATACTCTTTCAACAGTTCCTGCTGATTGTCCACCTGGTGCTTTACAATCACCAATCATA
CTGGAAAAAGAATTGGCTTGTCTATATCGTCATTTAATTAAACAACGTC