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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHC461
Library SH
(Link to library)
Clone ID SHC461
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHC461P
(Link to Original site)
Representative DNA sequence 
>SHC461 (SHC461Q) /CSM/SH/SHC4-C/SHC461Q.Seq.d/
ATTTTTTTTTTAAAAAAAATTTAAAAAATTTTTTAATGTATAATAATAATTAAAAAAAAA
AAAAAAAANTNTAACCCCNTTTAAAAAAAAAAAAAAAATTTTNCAATTTNGGGANTTAAA
AAAAAAAXXXXXXXXXXAAAGACCAATCTGATGAACCACCCAATCTTGTCGATGTTTTAA
ACAAGGCTCGTCAAGCTGATCCATCTTTGGAGCCAGAAATCAAAAAGATCCTTGATAACC
TCAAAAAACTTGAAGAATATAATCTCACCACCTCTGCCGATAATTATTCCTCTTTCCTCA
AGGCAGTCGCACTCGAAGTAGTTAATCGTGCTGAAATTCGTGAACAACAAAAGAAGGAGA
AACAAAGATTAACCACCTCTTTGAATAATCTTCGTAAACATCAAAAATATCTCAACGAAC
AAATCGCTCAATACAATCAATACCTCCAAGATTGTCGTCTCAAACATTATCAAAACAAGA
GCAAAAAGAAGAAGAAGGGAGATGGTGCCAAAGTTGGTCCTTTCAAATTCAGTTTCAGCG
AACTTCACAAGAAAGGTGTCATCGTCGACTCTGAAGTTCCTCAAATCACCAGAAAGAAGA
TTAAATTTGTCATTAGCTCTGATACCGTTGGTGTGTTTGATGTCTCTGCTAAAATGGCTG
GTATCGATGTTCAAACTATGCGTTTGGAACTTGATGACCTTTTAGAACT
sequence update 2002.10.25
Translated Amino Acid sequence 
fff*kkfkkffnv***LKKKKKXXTPFKKKKKIXQFXXLKKK---

---KDQSDEPPNLVDVLNKARQADPSLEPEIKKILDNLKKLEEYNLTTSADNYSSFLKAV
ALEVVNRAEIREQQKKEKQRLTTSLNNLRKHQKYLNEQIAQYNQYLQDCRLKHYQNKSKK
KKKGDGAKVGPFKFSFSELHKKGVIVDSEVPQITRKKIKFVISSDTVGVFDVSAKMAGID
VQTMRLELDDLLE
Translated Amino Acid sequence (All Frames) 
Frame A:
ifflkki*kif*ciiiikkkkkxxnpx*kkkknfxixgxkkk---

---KDQSDEPPNLVDVLNKARQADPSLEPEIKKILDNLKKLEEYNLTTSADNYSSFLKAV
ALEVVNRAEIREQQKKEKQRLTTSLNNLRKHQKYLNEQIAQYNQYLQDCRLKHYQNKSKK
KKKGDGAKVGPFKFSFSELHKKGVIVDSEVPQITRKKIKFVISSDTVGVFDVSAKMAGID
VQTMRLELDDLLE

Frame B:
fff*kkfkkffnv***LKKKKKXXTPFKKKKKIXQFXXLKKK---

---ktnlmnhpilsmf*trlvklihlwsqkskrslitsknlkniispplpiiiplssrqs
hsk*livlkfvnnkrrrnkd*ppl*iifvniknistnkslntintskivvsniiktrakr
rrremvpklvlsnsvsanftrkvssstlkflksperrlnlslaliplvclmsllkwlvsm
fklcvwnlmtf*n

Frame C:
fffkknlknflmynnn*kkkkkx*pxlkkkkkfxnxgx*kk---

---rpi**ttqscrcfkqgsss*sifgarnqkdp**pqkt*ri*shhlcr*lflfpqgsr
trss*sc*ns*ttkegetkinhlfe*ss*tskisqrtnrsiqsipprlssqtlskqeqke
eegrwcqswsfqiqfqrtsqerchrrl*sssnhqked*ich*l*yrwcv*clc*ngwyrc
snyafgt**pfrt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL214 (SHL214Q) /CSM/SH/SHL2-A/SHL214Q.Seq.d/                       1134   0.0
SHL120 (SHL120Q) /CSM/SH/SHL1-A/SHL120Q.Seq.d/                       1134   0.0
SHK836 (SHK836Q) /CSM/SH/SHK8-B/SHK836Q.Seq.d/                       1134   0.0
SHC461 (SHC461Q) /CSM/SH/SHC4-C/SHC461Q.Seq.d/                       1134   0.0
CHM205 (CHM205Q) /CSM/CH/CHM2-A/CHM205Q.Seq.d/                       1134   0.0
CHI422 (CHI422Q) /CSM/CH/CHI4-A/CHI422Q.Seq.d/                       1134   0.0
CHH143 (CHH143Q) /CSM/CH/CHH1-B/CHH143Q.Seq.d/                       1134   0.0
AHN241 (AHN241Q) /CSM/AH/AHN2-B/AHN241Q.Seq.d/                       1134   0.0
AHE179 (AHE179Q) /CSM/AH/AHE1-D/AHE179Q.Seq.d/                       1134   0.0
AHB795 (AHB795Q) /CSM/AH/AHB7-D/AHB795Q.Seq.d/                       1134   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U81156|U81156.1 Dictyostelium discoideum RasGAP1 (rgaA) gene, complete cds.  1134   0.0    1
L75794|L75794.1 Dictyostelium discoideum RasGTPase-activating protein gene, complete cds.  1134   0.0    1
DT043362|DT043362.1 Mdrtp1011E01.g1 Apple_EST_Mdrtp Malus x domestica x Malus sieversii cDNA, mRNA sequence.    48   0.25   1
BW248505|BW248505.1 Ciona intestinalis cDNA, clone:citb078a01, 5' end, single read.    48   0.25   1
AC012105|AC012105.2 Homo sapiens clone RP11-45G13, WORKING DRAFT SEQUENCE, 17 unordered pieces.    42   0.43   2
AC018555|AC018555.5 Homo sapiens chromosome 16 clone RP11-486F10, complete sequence.    42   0.44   3
BH552536|BH552536.1 BOHCC63TF BOHC Brassica oleracea genomic clone BOHCC63, DNA sequence.    46   0.99   1
AL161538|AL161538.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 38.    42   1.7    3
DN191182|DN191182.1 ACL5_13E12 AcL5 cDNA Library Angiostrongylus cantonensis cDNA, mRNA sequence.    44   3.9    1
DN190596|DN190596.1 ACL5_06E22 AcL5 cDNA Library Angiostrongylus cantonensis cDNA, mRNA sequence.    44   3.9    1
dna update 2006. 1. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81156_1(U81156|pid:none) Dictyostelium discoideum RasGAP1 (rgaA...   327   3e-88
AB076897_1(AB076897|pid:none) Ciona intestinalis Ci-IQGAP mRNA f...    85   2e-15
AK302981_1(AK302981|pid:none) Homo sapiens cDNA FLJ52376 complet...    84   5e-15
AK303054_1(AK303054|pid:none) Homo sapiens cDNA FLJ50398 complet...    84   5e-15
(Q13576) RecName: Full=Ras GTPase-activating-like protein IQGAP2...    84   5e-15
AY351902_1(AY351902|pid:none) Homo sapiens testis specific IQ mo...    84   5e-15
BT072767_1(BT072767|pid:none) Salmo salar clone ssal-rgf-539-307...    79   2e-13
AB093561_1(AB093561|pid:none) Xenopus laevis XIQGAP2 mRNA for IQ...    78   2e-13
BC150958_1(BC150958|pid:none) Mus musculus IQ motif containing G...    75   1e-12
(Q3UQ44) RecName: Full=Ras GTPase-activating-like protein IQGAP2;      75   1e-12
protein update 2009. 4.15
PSORT 

 psg: 0.53  gvh: 0.36  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.77  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SHC461 is nuc
5' end seq. ID SHC461F
5' end seq. 
>SHC461F.Seq
ATTTTTTTTTTAAAAAAAATTTAAAAAATTTTTTAATGTATAATAATAATTAAAAAAAAA
AAAAAAAANTNTAACCCCNTTTAAAAAAAAAAAAAAAATTTTNCAATTTNGGGANTTAAA
AAAAAAANNNNNNNNNN
Length of 5' end seq. 137
3' end seq. ID SHC461Z
3' end seq. 
>SHC461Z.Seq
NNNNNNNNNNAAAGACCAATCTGATGAACCACCCAATCTTGTCGATGTTTTAAACAAGGC
TCGTCAAGCTGATCCATCTTTGGAGCCAGAAATCAAAAAGATCCTTGATAACCTCAAAAA
ACTTGAAGAATATAATCTCACCACCTCTGCCGATAATTATTCCTCTTTCCTCAAGGCAGT
CGCACTCGAAGTAGTTAATCGTGCTGAAATTCGTGAACAACAAAAGAAGGAGAAACAAAG
ATTAACCACCTCTTTGAATAATCTTCGTAAACATCAAAAATATCTCAACGAACAAATCGC
TCAATACAATCAATACCTCCAAGATTGTCGTCTCAAACATTATCAAAACAAGAGCAAAAA
GAAGAAGAAGGGAGATGGTGCCAAAGTTGGTCCTTTCAAATTCAGTTTCAGCGAACTTCA
CAAGAAAGGTGTCATCGTCGACTCTGAAGTTCCTCAAATCACCAGAAAGAAGATTAAATT
TGTCATTAGCTCTGATACCGTTGGTGTGTTTGATGTCTCTGCTAAAATGGCTGGTATCGA
TGTTCAAACTATGCGTTTGGAACTTGATGACCTTTTAGAACT
Length of 3' end seq. 582
Connected seq. ID SHC461P
Connected seq. 
>SHC461P.Seq
ATTTTTTTTTTAAAAAAAATTTAAAAAATTTTTTAATGTATAATAATAATTAAAAAAAAA
AAAAAAAANTNTAACCCCNTTTAAAAAAAAAAAAAAAATTTTNCAATTTNGGGANTTAAA
AAAAAAA----------AAAGACCAATCTGATGAACCACCCAATCTTGTCGATGTTTTAA
ACAAGGCTCGTCAAGCTGATCCATCTTTGGAGCCAGAAATCAAAAAGATCCTTGATAACC
TCAAAAAACTTGAAGAATATAATCTCACCACCTCTGCCGATAATTATTCCTCTTTCCTCA
AGGCAGTCGCACTCGAAGTAGTTAATCGTGCTGAAATTCGTGAACAACAAAAGAAGGAGA
AACAAAGATTAACCACCTCTTTGAATAATCTTCGTAAACATCAAAAATATCTCAACGAAC
AAATCGCTCAATACAATCAATACCTCCAAGATTGTCGTCTCAAACATTATCAAAACAAGA
GCAAAAAGAAGAAGAAGGGAGATGGTGCCAAAGTTGGTCCTTTCAAATTCAGTTTCAGCG
AACTTCACAAGAAAGGTGTCATCGTCGACTCTGAAGTTCCTCAAATCACCAGAAAGAAGA
TTAAATTTGTCATTAGCTCTGATACCGTTGGTGTGTTTGATGTCTCTGCTAAAATGGCTG
GTATCGATGTTCAAACTATGCGTTTGGAACTTGATGACCTTTTAGAACT
Length of connected seq. 699
Full length Seq ID -
Full length Seq. -
Length of full length seq. -