NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHC448
Library SH
(Link to library)
Clone ID SHC448
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHC448P
(Link to Original site)
Representative DNA sequence 
>SHC448 (SHC448Q) /CSM/SH/SHC4-B/SHC448Q.Seq.d/
AAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAA
TAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXX
XXAATGTTGAAAATAATGAAATTACCAATGAACAAGGATGCCATTGAACAAAGCTCAACA
TTTACAACGTATTGAAAATGGTGAAGATATCGGATGAGTATGAAGCTGCCCNACATGAAG
NTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAAT
TAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAAC
TTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATG
TTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAAC
AAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAG
CTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGA
ATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATAT
sequence update 2002.10.25
Translated Amino Acid sequence 
kiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---MLKIMKLPMNKDAIEQSSTFTTY*kw*ryrmsmklpxmkxpf*mkmnkmllnykmkw
tn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdk
inkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*k
i
Translated Amino Acid sequence (All Frames) 
Frame A:
kiinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---nvenneitneqgch*tklniynvlkmvkisdeyeaaxhexafldeneqdaaklqnem
dqlellleeneeeqfsnknlqqlnenenqqqqqgqqqvqatnveqqiveqlkvikefqrq
dqqkkqkiqqendavylsdvekaqleldaelaknnkqenqdenlvqekqqspdqiknqlk
n

Frame B:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---MLKIMKLPMNKDAIEQSSTFTTY*kw*ryrmsmklpxmkxpf*mkmnkmllnykmkw
tn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdk
inkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*k
i

Frame C:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---c*k**nyq*trmplnkaqhlqriengedig*v*scpt*xclfr*k*trcc*itk*ng
pirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktr
stketknstrercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikk
y
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHC448 (SHC448Q) /CSM/SH/SHC4-B/SHC448Q.Seq.d/                        492   e-138
CHL874 (CHL874Q) /CSM/CH/CHL8-D/CHL874Q.Seq.d/                        450   e-125
VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        450   e-125
SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        450   e-125
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        450   e-125
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        450   e-125
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        450   e-125
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        450   e-125
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/                        450   e-125
SLB365 (SLB365Q) /CSM/SL/SLB3-C/SLB365Q.Seq.d/                        450   e-125
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   450   0.0    7
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   3e-25  1
AC158225|AC158225.1 Mus musculus chromosome 5 clone RP23-183K11 map 5, WORKING DRAFT SEQUENCE, 17 unordered pieces.    38   0.14   5
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.23   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.23   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.23   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.23   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.23   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.23   1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence.    48   0.23   1
dna update 2006. 1. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   146   4e-37
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   2.4
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   5.3
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   7.0
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   7.0
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote...    33   7.0
AE016819_111(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    33   9.1
(P47048) RecName: Full=Uncharacterized protein YJL049W;  &AY6926...    33   9.1
protein update 2009. 4.15
PSORT 

 psg: 0.64  gvh: 0.24  alm: 0.64  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  4.0 %: plasma membrane

>> prediction for SHC448 is nuc
5' end seq. ID SHC448F
5' end seq. 
>SHC448F.Seq
AAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAA
TAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNN
NN
Length of 5' end seq. 122
3' end seq. ID SHC448Z
3' end seq. 
>SHC448Z.Seq
NNNNNNNNNNAATGTTGAAAATAATGAAATTACCAATGAACAAGGATGCCATTGAACAAA
GCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGGATGAGTATGAAGCTGCCCN
ACATGAAGNTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAAT
GGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTT
ACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGC
AACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACA
AGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGT
TGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCA
AGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAA
AAATAT
Length of 3' end seq. 546
Connected seq. ID SHC448P
Connected seq. 
>SHC448P.Seq
AAAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAA
TAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA--------
--AATGTTGAAAATAATGAAATTACCAATGAACAAGGATGCCATTGAACAAAGCTCAACA
TTTACAACGTATTGAAAATGGTGAAGATATCGGATGAGTATGAAGCTGCCCNACATGAAG
NTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAAT
TAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAAC
TTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATG
TTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAAC
AAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAG
CTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGA
ATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATAT
Length of connected seq. 648
Full length Seq ID -
Full length Seq. -
Length of full length seq. -