SHC422
Library SH
(Link to library)
Clone ID SHC422
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16308-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHC422 (SHC422Q) /CSM/SH/SHC4-A/SHC422Q.Seq.d/
AAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATATAAT
GAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTCATT
AAAAGATGGTGAAATTAAACTTCATTTAATTCCACATTCACATTGTGATTCTGGATGGAC
ATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGTTCA
ATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATTGGATTTTT
AGAACAATGGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGTTAA
AAATGATAGAGTTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGCAAG
TTTAGAAAGTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATTTGG
AAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACCAAC
ATTACAAGCTCAATTTGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
k*NSFNNNNLIFFIVFKDIMKNFYYFILILLFFNEVCYSLKDGEIKLHLIPHSHCDSGWT
STMNEYYMGQVKSIISSMVQSLNVESNPPRKFVWSEIGFLEQWWDDMPIEIKNDFIKHVK
NDRVEFVNGGWVMNDEACASLESVIRQLSNGHKFIREKFGKQPESGWQIDPFGHSSLTPT
LQAQF---


Translated Amino Acid sequence (All Frames)
Frame A:
kikfi****fnffhsiqryneklllfyinfiif**sllfikrw*n*tsfnstftl*fwmd
innerilygss*kyyiingsiikc*ikst*kiclv*nwifrtmvg*yan*n*k*fyktc*
k**s*ickwwmgne**smckfrkcn*tiikwt*iy*reiwkttrewman*siwtfiidtn
itssi---


Frame B:
k*NSFNNNNLIFFIVFKDIMKNFYYFILILLFFNEVCYSLKDGEIKLHLIPHSHCDSGWT
STMNEYYMGQVKSIISSMVQSLNVESNPPRKFVWSEIGFLEQWWDDMPIEIKNDFIKHVK
NDRVEFVNGGWVMNDEACASLESVIRQLSNGHKFIREKFGKQPESGWQIDPFGHSSLTPT
LQAQF---


Frame C:
nkihliiii*ffs*yski**ktfiily*fyyflmkfaih*kmvklnfi*fhihivildgh
qq*tniiwvklkvlyhqwfnh*mlnqihlenlfglkldf*nnggmicqlklkmil*nmlk
mielnl*mvdg**mmkhvqv*kv*ldnyqmdinllernlennqrvdgklihldihh*hqh
ykln---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHC422 (SHC422Q) /CSM/SH/SHC4-A/SHC422Q.Seq.d/ 904 0.0
SHL340 (SHL340Q) /CSM/SH/SHL3-B/SHL340Q.Seq.d/ 896 0.0
SHL334 (SHL334Q) /CSM/SH/SHL3-B/SHL334Q.Seq.d/ 896 0.0
SHL308 (SHL308Q) /CSM/SH/SHL3-A/SHL308Q.Seq.d/ 896 0.0
SHL251 (SHL251Q) /CSM/SH/SHL2-C/SHL251Q.Seq.d/ 896 0.0
SHL163 (SHL163Q) /CSM/SH/SHL1-C/SHL163Q.Seq.d/ 896 0.0
SHK566 (SHK566Q) /CSM/SH/SHK5-C/SHK566Q.Seq.d/ 896 0.0
SHK514 (SHK514Q) /CSM/SH/SHK5-A/SHK514Q.Seq.d/ 896 0.0
SHK450 (SHK450Q) /CSM/SH/SHK4-C/SHK450Q.Seq.d/ 896 0.0
SHK365 (SHK365Q) /CSM/SH/SHK3-C/SHK365Q.Seq.d/ 896 0.0

own update 2002.10.15
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CF445746|CF445746.1 EST682091 normalized cDNA library of onion Allium cepa cDNA cloneACAHS20, mRNA sequence. 60 1e-08 2
BQ593037|BQ593037.1 E012375-024-028-C05-SP6 MPIZ-ADIS-024-developing root Beta vulgaris cDNA clone 024-028-C05 5-PRIME, mRNA sequence. 44 2e-06 2
CF196667|CF196667.1 Ir64bi1.6_B04 IR64-BI Oryza sativa (indica cultivar-group) cDNA clone IR64-BI1.6B04 5', mRNA sequence. 56 2e-05 2
BG449666|BG449666.1 NF055D11IN1F1092 Insect herbivory Medicago truncatula cDNA clone NF055D11IN 5', mRNA sequence. 58 2e-04 1
BQ141173|BQ141173.1 NF016G07PH1F1056 Phoma-infected Medicago truncatula cDNA clone NF016G07PH 5', mRNA sequence. 58 2e-04 1
DN812276|M2A1_RAT Alpha-mannosidase II (Mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase) (MAN II) (Golgi alpha-mannosidase II) (Mannosidase alpha class 2A member 1), mRNA sequence. 56 8e-04 1
CV688215|CV688215.1 sjs2-16-2_G01_sjs2-16-2G01-T3 SJS Schistosoma japonicum cDNA, mRNA sequence. 56 8e-04 1
CV682907|CV682907.1 service43_H06_sjs2-16-2B11-T3 SJS Schistosoma japonicum cDNA, mRNA sequence. 56 8e-04 1
CV682854|CV682854.1 service30_G09_sjs2-14-10C09-T3 SJS Schistosoma japonicum cDNA, mRNA sequence. 56 8e-04 1
BU804021|BU804021.1 SJFBFG06 SJF Schistosoma japonicum cDNA, mRNA sequence. 56 8e-04 1
dna update 2006. 1. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54YC4) RecName: Full=Alpha-mannosidase D; EC=3.2.1.24... 136 4e-31
AB011474_23(AB011474|pid:none) Arabidopsis thaliana genomic DNA,... 135 7e-31
(Q54YF7) RecName: Full=Alpha-mannosidase B; EC=3.2.1.24... 134 2e-30
AC148217_12(AC148217|pid:none) Medicago truncatula clone mth2-20... 132 6e-30
AK161799_1(AK161799|pid:none) Mus musculus 13 days embryo male t... 127 1e-28
AF107018_1(AF107018|pid:none) Mus musculus alpha-mannosidase IIx... 127 1e-28
BC142656_1(BC142656|pid:none) Homo sapiens mannosidase, alpha, c... 126 3e-28
L28821_1(L28821|pid:none) Homo sapiens alpha mannosidase II isoz... 126 4e-28
(P49641) RecName: Full=Alpha-mannosidase 2x; EC=3.2.1.1... 126 4e-28
AL391146_7(AL391146|pid:none) Arabidopsis thaliana DNA chromosom... 124 1e-27
protein update 2009. 4.15
PSORT

psg: 0.94 gvh: 0.66 alm: 0.50 top: 0.47 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: extracellular, including cell wall
28.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: cytoskeletal
8.0 %: nuclear
4.0 %: vacuolar

>> prediction for SHC422 is exc

5' end seq. ID SHC422F
5' end seq.
>SHC422F.Seq
AAAATAAAATTCATTTAATAATAATAATTTAATTTTTTTCATAGTATTCAAAGATATAAT
GAAAAACTTTTATTATTTTATATTAATTTTATTATTTTTTAATGAAGTTTGCTATTCATT
AAAAGATGGTGAAATTAAACTTCATTTAATTCCACATTCACATTGTGATTCTGGATGGAC
ATCAACAATGAACGAATATTATATGGGTCAAGTTAAAAGTATTATATCATCAATGGTTCA
ATCATTAAATGTTGAATCAAATCCACCTAGAAAATTTGTTTGGTCTGAAATTGGATTTTT
AGAACAATGGTGGGATGATATGCCAATTGAAATTAAAAATGATTTTATAAAACATGTTAA
AAATGATAGAGTTGAATTTGTAAATGGTGGATGGGTAATGAATGATGAAGCATGTGCAAG
TTTAGAAAGTGTAATTAGACAATTATCAAATGGACATAAATTTATTAGAGAGAAATTTGG
AAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGACATTCATCATTGACACCAAC
ATTACAAGCTCAATTTGNNNNNNNNNN
Length of 5' end seq. 567
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -