SHC385
Library SH
(Link to library)
Clone ID SHC385
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16360-1
Original site URL
Representative seq. ID SHC385P
(Link to Original site)
Representative DNA sequence
>SHC385 (SHC385Q) /CSM/SH/SHC3-D/SHC385Q.Seq.d/
ATTTTATTTAATTTCAATTAAATTATTTAAACACATACACAAAAAAAAAAATAATATTGA
TAAACGCTTCATCAAAATTATAATTTAATCTATAAAGACCATATTTTATTTATTNATTNA
ATTTTTTATTTTCTATTNATTNATTTATTCAAATTTTTTTTTTTTANTTTTAAATAANTA
AAAAAAAAAXXXXXXXXXXTACCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTC
GGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAG
AGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGG
AGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGT
TCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATG
TGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACT
AAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAA
TCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCA
AATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAAT
TGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTA
TGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACAANGGCCATAT
GCTTCTTCATACCATGCTCACAATATTGTTTTATT
sequence update 2002.10.25
Translated Amino Acid sequence
fi*fqlnylntytkkkiilinasskl*fnl*rpyfiyxxnflfsixxfiqifffxf*IXK
KK---

---PIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWVEATDLWRAEQ
TFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEVFRQTKLVN
ENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAVLRFNCFQN
DMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQXPYASSYHAHNIVL


Translated Amino Acid sequence (All Frames)
Frame A:
ilfnfn*ii*thtqkkk*y**tlhqnynliykdhilfixxifyflxixlfkffffxfk*x
kkk---

---yqsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkpvrvvhhfg*kllifgeln
klslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*fvkfsvklnws
mkmimlknqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl**vlyldlivsk
micgfwls*lvslslpygiyglsfqwlfvkvknxghmllhtmltilfy

Frame B:
fylisiklfkhihkkknnidkrfikiii*siktifylxixffifyxxiysnffflxlnx*
kk---

---tnrckrsnhfhsrrydscngvtkshsiyds*sqetl*sr*ewsitlgrsy*sles*t
nflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketssl*sfpsn*igq
*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgydecct*i*lfpk
*yvafgcrswflflylmafmvfhsngsssk*ktxaicffipcsqycfi

Frame C:
fi*fqlnylntytkkkiilinasskl*fnl*rpyfiyxxnflfsixxfiqifffxf*IXK
KK---

---PIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWVEATDLWRAEQ
TFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCEVFRQTKLVN
ENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSAVLRFNCFQN
DMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQXPYASSYHAHNIVL

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL378 (SHL378Q) /CSM/SH/SHL3-D/SHL378Q.Seq.d/ 1334 0.0
SHK418 (SHK418Q) /CSM/SH/SHK4-A/SHK418Q.Seq.d/ 1334 0.0
SHK186 (SHK186Q) /CSM/SH/SHK1-D/SHK186Q.Seq.d/ 1334 0.0
SHG576 (SHG576Q) /CSM/SH/SHG5-D/SHG576Q.Seq.d/ 1334 0.0
SHG486 (SHG486Q) /CSM/SH/SHG4-D/SHG486Q.Seq.d/ 1334 0.0
SHG409 (SHG409Q) /CSM/SH/SHG4-A/SHG409Q.Seq.d/ 1334 0.0
SHG402 (SHG402Q) /CSM/SH/SHG4-A/SHG402Q.Seq.d/ 1334 0.0
SHD873 (SHD873Q) /CSM/SH/SHD8-D/SHD873Q.Seq.d/ 1334 0.0
SHD789 (SHD789Q) /CSM/SH/SHD7-D/SHD789Q.Seq.d/ 1334 0.0
SHD746 (SHD746Q) /CSM/SH/SHD7-B/SHD746Q.Seq.d/ 1334 0.0

own update 2002.10.15
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds. 1334 0.0 1
BM598351|BM598351.1 17000687619693 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449727612 5', mRNA sequence. 52 0.020 1
BM586494|BM586494.1 17000687314976 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449681047 5', mRNA sequence. 52 0.020 1
AL596258|AL596258.15 Mouse DNA sequence from clone RP23-226P4 on chromosome 11. 52 0.020 1
AL390120|AL390120.9 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP11-521N12. 50 0.079 1
AC141620|AC141620.1 Homo sapiens chromosome 16 clone RP11-960H18, WORKING DRAFT SEQUENCE, 2 unordered pieces. 50 0.079 1
AC074367|AC074367.6 Homo sapiens BAC clone RP11-261A24 from 2, complete sequence. 50 0.079 1
AL139428|AL139428.15 Human DNA sequence from clone RP5-977F20 on chromosome 1. 50 0.079 1
AL049825|AL049825.18 Human DNA sequence from clone RP4-662B22 on chromosome 1p12-13.3. 50 0.079 1
BM634964|BM634964.1 17000687556298 A.Gam.ad.cDNA1 Anopheles gambiae cDNA clone 19600449670952 5', mRNA sequence. 48 0.31 1
dna update 2006. 1. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U... 452 e-126
CP001279_992(CP001279|pid:none) Nautilia profundicola AmH, compl... 40 0.096
CP001048_907(CP001048|pid:none) Yersinia pseudotuberculosis PB1/... 35 2.4
CP001025_1222(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 35 2.4

protein update 2009. 4.15
PSORT

psg: 0.99 gvh: 0.48 alm: 0.23 top: 0.47 tms: 0.20 mit: 0.28 mip: 0.07
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

24.0 %: mitochondrial
24.0 %: plasma membrane
24.0 %: endoplasmic reticulum
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: cytoplasmic
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for SHC385 is mit

5' end seq. ID SHC385F
5' end seq.
>SHC385F.Seq
ATTTTATTTAATTTCAATTAAATTATTTAAACACATACACAAAAAAAAAAATAATATTGA
TAAACGCTTCATCAAAATTATAATTTAATCTATAAAGACCATATTTTATTTATTNATTNA
ATTTTTTATTTTCTATTNATTNATTTATTCAAATTTTTTTTTTTTANTTTTAAATAANTA
AAAAAAAAANNNNNNNNNN
Length of 5' end seq. 199
3' end seq. ID SHC385Z
3' end seq.
>SHC385Z.Seq
NNNNNNNNNNTACCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATT
CCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTTAT
GAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAA
CAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCA
ATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGG
AAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTC
AATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGT
ACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATC
CTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAA
AATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTA
TGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACAANGGCCATATGCTTCTTCA
TACCATGCTCACAATATTGTTTTATT
Length of 3' end seq. 686
Connected seq. ID SHC385P
Connected seq.
>SHC385P.Seq
ATTTTATTTAATTTCAATTAAATTATTTAAACACATACACAAAAAAAAAAATAATATTGA
TAAACGCTTCATCAAAATTATAATTTAATCTATAAAGACCATATTTTATTTATTNATTNA
ATTTTTTATTTTCTATTNATTNATTTATTCAAATTTTTTTTTTTTANTTTTAAATAANTA
AAAAAAAAA----------TACCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTC
GGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAG
AGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGG
AGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGT
TCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATG
TGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACT
AAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAA
TCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCA
AATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAAT
TGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTA
TGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGTGAAAAACAANGGCCATAT
GCTTCTTCATACCATGCTCACAATATTGTTTTATT
Length of connected seq. 865
Full length Seq ID -
Full length Seq. -
Length of full length seq. -