>AFB115 (AFB115Q) /CSM/AF/AFB1-A/AFB115Q.Seq.d/
ATATTTTTATTTTTATATATAATTTTTTTTTTTTTTATTTAAATTAAAAAAAAAGTTTAT
TTAAATATAAAAAANGTCAGCACCAGCAGCAGCACCAGCAAAAGTATTACCATCAAGAAG
NGATTTTGATGAAAAAGAAAAAGAAANGGATGTAAGAACATCAAATATTGTTGCAGCAAG
AGCAGTCGCTGATGCAATCAGAACCTCATTAGGTCCAAANGGTATGGATAAAANGATCAT
TTCACCAAATAATGAAGTTTTAATTAGTAATGANGGNGCTACAATTCTTCAAAATTTANA
ATTAANACATCCAGCTGCTAAAANGTTAGCAGAATTAGCAAAAGCNCAAGATATTGAAGC
TGGCGATGGTNCAACATCAGTATGNGTAATTGCAGGATCATTATTAGGAGCAGTATCACA
ATTAANGGCAAAAGGTATTCATCCATCAATTATTAGNGAAGCATTTAATTTAGCATTGAA
TAAATCATTAGAGGTATTGGTATCAATGTCAGTTCCAGTTAGTTNAACCGATAGAGTTAG
TTTGGTAAXXXXXXXXXX

yfyfyi*fffflfklkkkfi*i*KXSAPAAAPAKVLPSRXDFDEKEKEXDVRTSNIVAAR
AVADAIRTSLGPXGMDKXIISPNNEVLISNXGATILQNLXLXHPAAKXLAELAKAQDIEA
GDGXTSVXVIAGSLLGAVSQLXAKGIHPSIIXEAFNLALNKSLEVLVSMSVPVSXTDRVS
LV---

Frame A:
iflflyiiffffi*ikkkvylnikxvstssstsksitikkxf**krkrxgcknikyccsk
ssr*cnqnlirskxyg*xdhftk**sfn***xxynsskfxixtssc*xvsrisksxry*s
wrwxnismxncriiirssitixgkryssiny*xsi*fsie*iirgiginvsss*xnr*s*
fg---


Frame B:
yfyfyi*fffflfklkkkfi*i*KXSAPAAAPAKVLPSRXDFDEKEKEXDVRTSNIVAAR
AVADAIRTSLGPXGMDKXIISPNNEVLISNXGATILQNLXLXHPAAKXLAELAKAQDIEA
GDGXTSVXVIAGSLLGAVSQLXAKGIHPSIIXEAFNLALNKSLEVLVSMSVPVSXTDRVS
LV---


Frame C:
ififiynffffyln*kkslfkykkxqhqqqhqqkyyhqexilmkkkkkxm*ehqillqqe
qslmqseph*vqxvwikxsfhqimkf*lvmxxlqffkixn*xiqllkx*qn*qkxkilkl
amvqhqyx*lqdhy*eqyhn*xqkvfihqllxkhli*h*inh*rywyqcqfqlvxpielv
w---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFB115 (AFB115Q) /CSM/AF/AFB1-A/AFB115Q.Seq.d/                        884   0.0
VFA872 (VFA872Q) /CSM/VF/VFA8-C/VFA872Q.Seq.d/                        710   0.0
SLH167 (SLH167Q) /CSM/SL/SLH1-C/SLH167Q.Seq.d/                        670   0.0
VFN162 (VFN162Q) /CSM/VF/VFN1-C/VFN162Q.Seq.d/                         74   3e-12
VSH847 (VSH847Q) /CSM/VS/VSH8-B/VSH847Q.Seq.d/                         54   2e-06
VFO443 (VFO443Q) /CSM/VF/VFO4-B/VFO443Q.Seq.d/                         54   2e-06
VFN421 (VFN421Q) /CSM/VF/VFN4-A/VFN421Q.Seq.d/                         54   2e-06
VFM225 (VFM225Q) /CSM/VF/VFM2-B/VFM225Q.Seq.d/                         54   2e-06
VFL502 (VFL502Q) /CSM/VF/VFL5-A/VFL502Q.Seq.d/                         54   2e-06
VFG552 (VFG552Q) /CSM/VF/VFG5-C/VFG552Q.Seq.d/                         54   2e-06

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CC819546|CC819546.1 1O0006H17F Oxytricha plasmid UUGC1O library Sterkiella histriomuscorum genomic clone UUGC1O0006H17 F, genomic survey sequence.    50  3e-06  2
AV398418|AV398418.1 Bombyx mori cDNA clone:NV021787.              50  1e-04  2
BP124671|BP124671.1 Bombyx mori cDNA, clone:fbS20129.             50  1e-04  2
AV398969|AV398969.1 Bombyx mori cDNA clone:NV060485.              50  1e-04  2
AV398272|AV398272.1 Bombyx mori cDNA clone:NV021328.              50  1e-04  2
AV400924|AV400924.1 Bombyx mori cDNA clone:br--1988.              50  1e-04  2
AU000592|AU000592.1 Bombyx mori cDNA, clone e40751.               50  1e-04  2
BF779812|BF779812.1 3240-66 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3240-66, mRNA sequence.    56  5e-04  1
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    50  8e-04  6
CD740076|CD740076.1 4028910 1GAL - Chicken Intestinal Lymphocyte Gallus gallus cDNA clone 1GAL_22F17 5', mRNA sequence.    50  0.001  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54CL2) RecName: Full=T-complex protein 1 subunit delta;       ...   182   4e-45
AF494043_1(AF494043|pid:none) Physarum polycephalum chaperonin c...   124   1e-27
AE017347_133(AE017347|pid:none) Cryptococcus neoformans var. neo...   116   3e-25
(Q6BXF6) RecName: Full=T-complex protein 1 subunit delta;       ...   116   3e-25
AP007167_352(AP007167|pid:none) Aspergillus oryzae RIB40 genomic...   116   4e-25
AJ251587_1(AJ251587|pid:none) Gallus gallus mRNA for chaperonin ...   116   4e-25
AJ719421_1(AJ719421|pid:none) Gallus gallus partial mRNA for hyp...   116   4e-25
BX842624_23(BX842624|pid:none) Neurospora crassa DNA linkage gro...   116   4e-25
AY850329_1(AY850329|pid:none) Magnaporthe grisea T-complex prote...   115   6e-25
AB430834_1(AB430834|pid:none) Delia antiqua DaCCT4 mRNA for chap...   115   6e-25

 psg: 0.63  gvh: 0.41  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for AFB115 is cyt

>AFB115F.Seq
ATATTTTTATTTTTATATATAATTTTTTTTTTTTTTATTTAAATTAAAAAAAAAGTTTAT
TTAAATATAAAAAANGTCAGCACCAGCAGCAGCACCAGCAAAAGTATTACCATCAAGAAG
NGATTTTGATGAAAAAGAAAAAGAAANGGATGTAAGAACATCAAATATTGTTGCAGCAAG
AGCAGTCGCTGATGCAATCAGAACCTCATTAGGTCCAAANGGTATGGATAAAANGATCAT
TTCACCAAATAATGAAGTTTTAATTAGTAATGANGGNGCTACAATTCTTCAAAATTTANA
ATTAANACATCCAGCTGCTAAAANGTTAGCAGAATTAGCAAAAGCNCAAGATATTGAAGC
TGGCGATGGTNCAACATCAGTATGNGTAATTGCAGGATCATTATTAGGAGCAGTATCACA
ATTAANGGCAAAAGGTATTCATCCATCAATTATTAGNGAAGCATTTAATTTAGCATTGAA
TAAATCATTAGAGGTATTGGTATCAATGTCAGTTCCAGTTAGTTNAACCGATAGAGTTAG
TTTGGTAA----------