SHC326
Library SH
(Link to library)
Clone ID SHC326
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16259-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHC326 (SHC326Q) /CSM/SH/SHC3-B/SHC326Q.Seq.d/
ATATATTTTTCATTTTATTAAAATTAATAATATATAATATATAATATATATATTACTTTT
ACTAATATATATTTTTTTAATTTAAAAAAATGTTAATAAATAAAATTTTATTTTTATTTT
TTATTCTATCACTAACAATATTTAATATTGTTGATGCTGGTTATACTTTATCTGTTAAAG
GAAAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAAATTACTGAAATTTTGTTAA
CTTCCCAAAAAATATTACCAGATTACTCAATTTCATTCACTTGTGAAATTCCATCTGCCA
ATAGCCCTGTTTGTACGAGTATGGATATGGACTTTACAAAATTAGCTGGAAAATTAACTC
TAAGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCCTATGATATTAAAGCCAATC
AAATTCCACTACCATTACCAACTGAGGTTAAATGGGAACCACCAACAATGGCTGGTACAG
CTGCTCTTATGACTGGAGATTTCTTATTATTTGGTGAAGATGTTACAACTCTTCCTGGTG
TTTACAATTCAAAACCAGTGTCATTGGGTGTTTCATCAAATACTGACXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
iffillkliiyni*yiyyfy*yiff*FKKMLINKILFLFFILSLTIFNIVDAGYTLSVKG
KKLIYTGANVDFKITEILLTSQKILPDYSISFTCEIPSANSPVCTSMDMDFTKLAGKLTL
RGANLKTPNIVIAYDIKANQIPLPLPTEVKWEPPTMAGTAALMTGDFLLFGEDVTTLPGV
YNSKPVSLGVSSNT---


Translated Amino Acid sequence (All Frames)
Frame A:
iyfsfy*n**yiiyniyitftniyffnlkkc**ikfyfyflfyh*qylillmlvilyllk
eks*yilvpm*iskllkfc*lpkkyyqitqfhslvkfhlpialfvrvwiwtlqn*len*l
*geqi*kpqi**lpmilkpikfhyhyqlrlngnhqqwlvqlll*leisyylvkmlqlflv
ftiqnqchwvfhqil---


Frame B:
yifhfikinni*yiiyilllliyifli*knvnk*nfififysitnni*yc*cwlyfic*r
kkvniywcqcrfqny*nfvnfpknitrllnfihl*nsicq*pclyeygyglykiswkins
kgskfknpkysncl*y*sqsnsttitn*g*mgttnngwyscsydwrfliiw*rcynsswc
lqfktsvigcfiky*---


Frame C:
iffillkliiyni*yiyyfy*yiff*FKKMLINKILFLFFILSLTIFNIVDAGYTLSVKG
KKLIYTGANVDFKITEILLTSQKILPDYSISFTCEIPSANSPVCTSMDMDFTKLAGKLTL
RGANLKTPNIVIAYDIKANQIPLPLPTEVKWEPPTMAGTAALMTGDFLLFGEDVTTLPGV
YNSKPVSLGVSSNT---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHC326 (SHC326Q) /CSM/SH/SHC3-B/SHC326Q.Seq.d/ 922 0.0
SHB874 (SHB874Q) /CSM/SH/SHB8-D/SHB874Q.Seq.d/ 914 0.0
SHL869 (SHL869Q) /CSM/SH/SHL8-C/SHL869Q.Seq.d/ 914 0.0
SHL629 (SHL629Q) /CSM/SH/SHL6-B/SHL629Q.Seq.d/ 914 0.0
SHL431 (SHL431Q) /CSM/SH/SHL4-B/SHL431Q.Seq.d/ 914 0.0
SHL351 (SHL351Q) /CSM/SH/SHL3-C/SHL351Q.Seq.d/ 914 0.0
SHL288 (SHL288Q) /CSM/SH/SHL2-D/SHL288Q.Seq.d/ 914 0.0
SHL231 (SHL231Q) /CSM/SH/SHL2-B/SHL231Q.Seq.d/ 914 0.0
SHL114 (SHL114Q) /CSM/SH/SHL1-A/SHL114Q.Seq.d/ 914 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 38 0.049 8
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 40 0.065 5
DR905158|DR905158.1 JGI_XZT70209.rev NIH_XGC_tropTad5 Xenopus tropicalis cDNA clone IMAGE:7788972 3', mRNA sequence. 48 0.21 1
CX510223|CX510223.1 JGI_XZG35926.rev NIH_XGC_tropGas7 Xenopus tropicalis cDNA clone IMAGE:7551104 3', mRNA sequence. 48 0.21 1
CX509997|CX509997.1 JGI_XZG35786.rev NIH_XGC_tropGas7 Xenopus tropicalis cDNA clone IMAGE:7550925 3', mRNA sequence. 48 0.21 1
AL680934|AL680934.2 Xenopus tropicalis EST, clone TGas069j02 5'. 48 0.21 1
BX749608|BX749608.1 Xenopus tropicalis EST, clone TGas069j02 3'. 48 0.21 1
AE014852|AE014852.2 Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete sequence. 40 0.53 6
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 46 0.83 1
CE815366|CE815366.1 tigr-gss-dog-17000318377218 Dog Library Canis familiaris genomic, genomic survey sequence. 46 0.83 1
dna update 2006. 1. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000356_376(CP000356|pid:none) Sphingopyxis alaskensis RB2256, ... 33 4.3
CP000685_1388(CP000685|pid:none) Flavobacterium johnsoniae UW101... 33 4.3
AY524946_1(AY524946|pid:none) Rhampholeon marshalli isolate 10 r... 33 5.6
CP001055_10(CP001055|pid:none) Elusimicrobium minutum Pei191, co... 33 5.6
BA000039_2421(BA000039|pid:none) Thermosynechococcus elongatus B... 33 7.3
AY524943_1(AY524943|pid:none) Rhampholeon temporalis isolate 3 r... 32 9.5
DQ385413_1(DQ385413|pid:none) Phrynosoma modestum recombination ... 32 9.5

protein update 2008.11.13
PSORT

psg: 1.02 gvh: 0.61 alm: 0.23 top: 0.40 tms: 0.07 mit: 0.37 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
16.0 %: mitochondrial
16.0 %: nuclear
16.0 %: cytoplasmic
12.0 %: Golgi
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SHC326 is end

5' end seq. ID SHC326F
5' end seq.
>SHC326F.Seq
ATATATTTTTCATTTTATTAAAATTAATAATATATAATATATAATATATATATTACTTTT
ACTAATATATATTTTTTTAATTTAAAAAAATGTTAATAAATAAAATTTTATTTTTATTTT
TTATTCTATCACTAACAATATTTAATATTGTTGATGCTGGTTATACTTTATCTGTTAAAG
GAAAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAAATTACTGAAATTTTGTTAA
CTTCCCAAAAAATATTACCAGATTACTCAATTTCATTCACTTGTGAAATTCCATCTGCCA
ATAGCCCTGTTTGTACGAGTATGGATATGGACTTTACAAAATTAGCTGGAAAATTAACTC
TAAGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCCTATGATATTAAAGCCAATC
AAATTCCACTACCATTACCAACTGAGGTTAAATGGGAACCACCAACAATGGCTGGTACAG
CTGCTCTTATGACTGGAGATTTCTTATTATTTGGTGAAGATGTTACAACTCTTCCTGGTG
TTTACAATTCAAAACCAGTGTCATTGGGTGTTTCATCAAATACTGACNNNNNNNNNN
Length of 5' end seq. 597
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -