>SHC315 (SHC315Q) /CSM/SH/SHC3-A/SHC315Q.Seq.d/
XXXXXXXXXXATCAATTTGGTAANCGATTATTCAATGATTATCAAGGTANATTNAAAACA
NCCTCAACAGCAAGAACCAGTTANTTAGCCTTTGAGCAATTANTGAAACNTTGCGANTTN
TTTGACCTATACANCAAAGAAAAGTATCAANAGGCAANTNAAAANANTGAAAATTTGGAA
ATTTTANCAATNTTTGNATCAGAAATCNATTCAAANGNACAAGATTATNGNTTCCTTTCN
CCACATATCNCTANAAANTTTTTTTNTATCA

---QFGXRLFNDYQGXXKTXSTARTSXLAFEQLXKXCXXFDLYXKEKYQXAXXXXENLEI
LXXFXSEIXSXXQDYXFLSPHIXXXFFXI

Frame A:
---siw*xiiq*lsrxixnxlnsknqlxsl*aixetlrxx*pixqrkvsxgxxkx*kfgn
fxnxxirnxfkxtrlxxpfxtyxxkxfxy


Frame B:
---QFGXRLFNDYQGXXKTXSTARTSXLAFEQLXKXCXXFDLYXKEKYQXAXXXXENLEI
LXXFXSEIXSXXQDYXFLSPHIXXXFFXI


Frame C:
---nlvxdysmiikvxxkxpqqqepvx*plsnx*nxaxxltytxkksixrqxkxxkiwkf
xqxlxqksiqxxkixxsfxhislxxffxs

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHC315 (SHC315Q) /CSM/SH/SHC3-A/SHC315Q.Seq.d/                        335   2e-91
VHO714 (VHO714Q) /CSM/VH/VHO7-A/VHO714Q.Seq.d/                        321   3e-87
VHO154 (VHO154Q) /CSM/VH/VHO1-C/VHO154Q.Seq.d/                        315   2e-85
VHA592 (VHA592Q) /CSM/VH/VHA5-D/VHA592Q.Seq.d/                        313   7e-85
VHP254 (VHP254Q) /CSM/VH/VHP2-C/VHP254Q.Seq.d/                        311   3e-84
VHP160 (VHP160Q) /CSM/VH/VHP1-C/VHP160Q.Seq.d/                        311   3e-84
VHN194 (VHN194Q) /CSM/VH/VHN1-D/VHN194Q.Seq.d/                        311   3e-84
VHL333 (VHL333Q) /CSM/VH/VHL3-B/VHL333Q.Seq.d/                        311   3e-84
VHI450 (VHI450Q) /CSM/VH/VHI4-C/VHI450Q.Seq.d/                        311   3e-84
VHH243 (VHH243Q) /CSM/VH/VHH2-B/VHH243Q.Seq.d/                        311   3e-84

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 2,635,415
Number of Sequences: 49397409
Number of extensions: 2635415
Number of successful extensions: 183239
Number of sequences better than 10.0: 0
length of query: 271
length of database: 55,046,002,006
effective HSP length: 22
effective length of query: 249
effective length of database: 53,959,259,008
effective search space: 13435855492992
effective search space used: 13435855492992
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 158,199,772

 psg: 0.64  gvh: 0.48  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for SHC315 is mit

>SHC315Z.Seq
NNNNNNNNNNATCAATTTGGTAANCGATTATTCAATGATTATCAAGGTANATTNAAAACA
NCCTCAACAGCAAGAACCAGTTANTTAGCCTTTGAGCAATTANTGAAACNTTGCGANTTN
TTTGACCTATACANCAAAGAAAAGTATCAANAGGCAANTNAAAANANTGAAAATTTGGAA
ATTTTANCAATNTTTGNATCAGAAATCNATTCAAANGNACAAGATTATNGNTTCCTTTCN
CCACATATCNCTANAAANTTTTTTTNTATCA