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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHC302
Library SH
(Link to library)
Clone ID SHC302
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16307-1
Original site URL
Representative seq. ID SHC302P
(Link to Original site)
Representative DNA sequence 
>SHC302 (SHC302Q) /CSM/SH/SHC3-A/SHC302Q.Seq.d/
ATACACTTAATTATAATTAATTTGTAATAATTTTTCAAATAAATAATATTCTACTTTTTT
TTTTATTATTTTTTTTTCCAAACTATTAATAATAATTATATTTTCAGACAATTTAATAAA
TAATAATAATAATAATAATAATAATATTAATAAATCAAAANGAGCAACAATAACAANGAA
GCACAACANCCAGTCGAGTCTACAAANGTANAATCTCAACAAAANGTNGTTCAATCAGAT
NGTCCAGTAGTAAANGAAAATAANGATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAGTAATAATAATAATAATAGT
AGTATTGANGAAAAAAAAAAXXXXXXXXXXATACACTTAATTATAATTAATTTGTAATAA
TTTTTCAAATAAATAATATTNTACTTTTTTTTTTATTATTTTTTTTTCCAAACTATTAAT
AATAATTATATTTTCAGACAATTTAATAAATAATAATAATAATAATAATAATAATATTAA
TAAATCANAATGAGCANCAACAACAATGAAGCACAACAACCAGNCGAGTCGACAAATGTA
GAATCTCAACAANATGTTGTTCAANCAGA
sequence update 2002.10.25
Translated Amino Acid sequence 
ihliiinl**ffk*iifyfffyyfffqtinnnyifrqfnk********y**IKXSNNNXE
AQXPVESTXVXSQQXVVQSDXPVVXENXDNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNS
SIXEKK---

---IHLIIINL**ffk*iixyfffyyfffqtinnnyifrqfnk********y**ixmsxn
nneaqqpxestnvesqqxvvqx
Translated Amino Acid sequence (All Frames) 
Frame A:
ihliiinl**ffk*iifyfffyyfffqtinnnyifrqfnk********y**IKXSNNNXE
AQXPVESTXVXSQQXVVQSDXPVVXENXDNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNS
SIXEKK---

---IHLIIINL**ffk*iixyfffyyfffqtinnnyifrqfnk********y**ixmsxn
nneaqqpxestnvesqqxvvqx

Frame B:
yt*l*licnnfsnk*ystfffiiffsklliiiifsdnlinnnnnnnnninkskxatitxk
hnxqsslqxxnlnkxxfnqxvq**xkixiiiiiiiiiiiiiiiiiiiiiiiiiviiiiiv
vlxkkk---

---yt*l*licnnfsnk*yxtfffiiffsklliiiifsdnlinnnnnnnnninksx*axt
tmkhnnqxsrqm*nlnxmlfxq

Frame C:
tlnyn*fviifqinnillffllfffpny***lyfqti**iiiiiiiiilinqxeqq*qxs
ttxsrvykxxistkxxsirxssskxk*x********************************
y*xkkk---

---tlnyn*fviifqinnixlffllfffpny***lyfqti**iiiiiiiiilinxnexqq
q*stttxrvdkcristxccsxr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHC302 (SHC302Q) /CSM/SH/SHC3-A/SHC302Q.Seq.d/                        151   2e-35
SSM591 (SSM591Q) /CSM/SS/SSM5-D/SSM591Q.Seq.d/                        107   2e-22
SSJ177 (SSJ177Q) /CSM/SS/SSJ1-D/SSJ177Q.Seq.d/                         42   0.010
VSK425 (VSK425Q) /CSM/VS/VSK4-B/VSK425Q.Seq.d/                         38   0.16
VSI145 (VSI145Q) /CSM/VS/VSI1-B/VSI145Q.Seq.d/                         38   0.16
VFI211 (VFI211Q) /CSM/VF/VFI2-A/VFI211Q.Seq.d/                         38   0.16
VSI232 (VSI232Q) /CSM/VS/VSI2-B/VSI232Q.Seq.d/                         36   0.62
VSG864 (VSG864Q) /CSM/VS/VSG8-C/VSG864Q.Seq.d/                         36   0.62
VFO172 (VFO172Q) /CSM/VF/VFO1-C/VFO172Q.Seq.d/                         36   0.62
VFM530 (VFM530Q) /CSM/VF/VFM5-B/VFM530Q.Seq.d/                         36   0.62
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CN757257|CN757257.1 ID0AAA1BH12FM1 ApMS Acyrthosiphon pisum cDNA clone ID0AAA1BH12 5',mRNA sequence.    36   0.081  2
DD097953|DD097953.1 Transgenic non-human animals for pharmacological and toxicological studies.    34   0.086  3
BH695488|BH695488.1 BOMFN89TF BO_2_3_KB Brassica oleracea genomic clone BOMFN89, DNA sequence.    36   0.13   2
CW953935|CW953935.1 TcB40.1_G02_T7 Tribolium BAC library Tribolium castaneum genomic, genomic survey sequence.    38   0.13   2
CW955469|CW955469.1 TcB45.3_G01_T7 Tribolium BAC library Tribolium castaneum genomic, genomic survey sequence.    38   0.13   2
CW955095|CW955095.1 TcB44.4_G06_T7 Tribolium BAC library Tribolium castaneum genomic, genomic survey sequence.    38   0.13   2
CW946101|CW946101.1 TcB28.3_H09_T7 Tribolium BAC library Tribolium castaneum genomic, genomic survey sequence.    38   0.14   2
CN764073|CN764073.1 ID0AAA8DF02RM1 ApMS Acyrthosiphon pisum cDNA clone ID0AAA8DF02 5', mRNA sequence.    40   0.14   2
CW948473|CW948473.1 TcB32.4_C07_T7 Tribolium BAC library Tribolium castaneum genomic, genomic survey sequence.    38   0.14   2
CW951095|CW951095.1 TcB36.2_H10_T7 Tribolium BAC library Tribolium castaneum genomic, genomic survey sequence.    38   0.15   2
dna update 2006. 1. 2
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 226,788,042
protein update 2009. 4.15
PSORT 

 psg: 0.69  gvh: 0.42  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SHC302 is mit
5' end seq. ID SHC302F
5' end seq. 
>SHC302F.Seq
ATACACTTAATTATAATTAATTTGTAATAATTTTTCAAATAAATAATATTCTACTTTTTT
TTTTATTATTTTTTTTTCCAAACTATTAATAATAATTATATTTTCAGACAATTTAATAAA
TAATAATAATAATAATAATAATAATATTAATAAATCAAAANGAGCAACAATAACAANGAA
GCACAACANCCAGTCGAGTCTACAAANGTANAATCTCAACAAAANGTNGTTCAATCAGAT
NGTCCAGTAGTAAANGAAAATAANGATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAGTAATAATAATAATAATAGT
AGTATTGANGAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 390
3' end seq. ID SHC302Z
3' end seq. 
>SHC302Z.Seq
NNNNNNNNNNATACACTTAATTATAATTAATTTGTAATAATTTTTCAAATAAATAATATT
NTACTTTTTTTTTTATTATTTTTTTTTCCAAACTATTAATAATAATTATATTTTCAGACA
ATTTAATAAATAATAATAATAATAATAATAATAATATTAATAAATCANAATGAGCANCAA
CAACAATGAAGCACAACAACCAGNCGAGTCGACAAATGTAGAATCTCAACAANATGTTGT
TCAANCAGA
Length of 3' end seq. 249
Connected seq. ID SHC302P
Connected seq. 
>SHC302P.Seq
ATACACTTAATTATAATTAATTTGTAATAATTTTTCAAATAAATAATATTCTACTTTTTT
TTTTATTATTTTTTTTTCCAAACTATTAATAATAATTATATTTTCAGACAATTTAATAAA
TAATAATAATAATAATAATAATAATATTAATAAATCAAAANGAGCAACAATAACAANGAA
GCACAACANCCAGTCGAGTCTACAAANGTANAATCTCAACAAAANGTNGTTCAATCAGAT
NGTCCAGTAGTAAANGAAAATAANGATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAGTAATAATAATAATAATAGT
AGTATTGANGAAAAAAAAAA----------ATACACTTAATTATAATTAATTTGTAATAA
TTTTTCAAATAAATAATATTNTACTTTTTTTTTTATTATTTTTTTTTCCAAACTATTAAT
AATAATTATATTTTCAGACAATTTAATAAATAATAATAATAATAATAATAATAATATTAA
TAAATCANAATGAGCANCAACAACAATGAAGCACAACAACCAGNCGAGTCGACAAATGTA
GAATCTCAACAANATGTTGTTCAANCAGA
Length of connected seq. 619
Full length Seq ID -
Full length Seq. -
Length of full length seq. -