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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHC267
Library SH
(Link to library)
Clone ID SHC267
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16361-1
Original site URL
Representative seq. ID SHC267P
(Link to Original site)
Representative DNA sequence 
>SHC267 (SHC267Q) /CSM/SH/SHC2-C/SHC267Q.Seq.d/
GTAGTAATAATATTGGTAGAGATATTGGTAATAATCAAAGTAGTAGAAATTTAAAACCAA
AACCATCACAAAGCAATTTGAAATGGATAGCAAGAGATTTAAAAAAGAAATCTGTTAGAA
AAGATTCAGAGAGAAAGTTAAAGAGTAGTGGTGTTTTAAAGAAAAAGAATACTGTGATGG
ACTTTGGTGAAGATGATGGTGGTAGTGGTGACGATGGTAATATAACCGAGGGTTTACCAA
TTAGTGAAGGTATGGATGATTTACCATCATCTTCAAACTCTCGTGGCGGCAGCGGTAATG
ATGAACAAAAGAAACAGTTCCCAAAGGAAATGAATTCTCCATCATCGGAATATGGCACAA
CAAGTGGCGGTCAAAGATTTGATACATTGGTTGATCCTGATATTAGTTTAGCAGAGATGG
AAGAGAAAATGCGTCAACACAAGGTATACCAAGAGCAACAACAGCAACAACAACAACAGC
AACAACAACAAAAGCAAAAAGATAAAGAGTTGTCATCACAAAAGAAGAAACCATCATCAA
TGCAATTAAGTAAAAAGAAACATGTCGCCAAAGAAGATTCTGAAACATTAGAGACAATCA
TTGGTGAAGAGAAGXXXXXXXXXXGGTGCTTCTCCATTAATTATGAGTATTTGGACTGTA
CCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTG
TTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAG
AGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTT
GGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTT
CTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTC
GTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGAT
AATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAA
GAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTT
AATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGG
CTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATT
CCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTCAC
AATATTGTTTTATTCT
sequence update 2002.10.25
Translated Amino Acid sequence 
SNNIGRDIGNNQSSRNLKPKPSQSNLKWIARDLKKKSVRKDSERKLKSSGVLKKKNTVMD
FGEDDGGSGDDGNITEGLPISEGMDDLPSSSNSRGGSGNDEQKKQFPKEMNSPSSEYGTT
SGGQRFDTLVDPDISLAEMEEKMRQHKVYQEQQQQQQQQQQQQKQKDKELSSQKKKPSSM
QLSKKKHVAKEDSETLETIIGEEK---

---GASPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSL
WVEATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPV
VCEVFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAM
MSAVLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLF
Translated Amino Acid sequence (All Frames) 
Frame A:
vviilveilviikvvei*nqnhhkai*ng*qei*krnllekiqres*rvvvf*rkril*w
tlvkmmvvvvtmvi*prvyqlvkvwmiyhhlqtlvaaavmmnkrnssqrk*ilhhrnmaq
qvavkdlihwlililv*qrwkrkcvntrytksnnsnnnnsnnnkskkikschhkrrnhhq
cn*vkrnmspkkilkh*rqslvkr---

---GASPLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSL
WVEATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPV
VCEVFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAM
MSAVLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLF

Frame B:
***yw*ryw**sk**kfktktitkqfemdskrfkkeic*krfrekvke*wcfkekeycdg
lw*r*ww*w*rw*ynrgftn**ryg*ftiifklswrqr***tketvpkgnefsiigiwhn
kwrski*yig*s*y*fsrdgrenastqgiprattattttatttkakr*rvvitkeetiin
aik*ketcrqrrf*nirdnhw*re---

---vllh*l*vfglyqsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkpvrvvhhf
g*kllifgelnklslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*
fvkfsvklnwsmkmimlknqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl*
*vlyldlivskmicgfwls*lvslslpygiyglsfqwlfvkvknnghmllhtmltilfys

Frame C:
SNNIGRDIGNNQSSRNLKPKPSQSNLKWIARDLKKKSVRKDSERKLKSSGVLKKKNTVMD
FGEDDGGSGDDGNITEGLPISEGMDDLPSSSNSRGGSGNDEQKKQFPKEMNSPSSEYGTT
SGGQRFDTLVDPDISLAEMEEKMRQHKVYQEQQQQQQQQQQQQKQKDKELSSQKKKPSSM
QLSKKKHVAKEDSETLETIIGEEK---

---cfsinyeyldctnrckrsnhfhsrrydscngvtkshsiyds*sqetl*sr*ewsitl
grsy*sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketss
l*sfpsn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgyd
ecct*i*lfpk*yvafgcrswflflylmafmvfhsngsssk*ktmaicffipcsqycfi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHC267 (SHC267Q) /CSM/SH/SHC2-C/SHC267Q.Seq.d/                       1616   0.0
SHG576 (SHG576Q) /CSM/SH/SHG5-D/SHG576Q.Seq.d/                       1411   0.0
SHG409 (SHG409Q) /CSM/SH/SHG4-A/SHG409Q.Seq.d/                       1411   0.0
SHG402 (SHG402Q) /CSM/SH/SHG4-A/SHG402Q.Seq.d/                       1411   0.0
SHA749 (SHA749Q) /CSM/SH/SHA7-C/SHA749Q.Seq.d/                       1411   0.0
SHA559 (SHA559Q) /CSM/SH/SHA5-C/SHA559Q.Seq.d/                       1411   0.0
SFK796 (SFK796Q) /CSM/SF/SFK7-D/SFK796Q.Seq.d/                       1411   0.0
CHQ844 (CHQ844Q) /CSM/CH/CHQ8-B/CHQ844Q.Seq.d/                       1411   0.0
CHQ528 (CHQ528Q) /CSM/CH/CHQ5-B/CHQ528Q.Seq.d/                       1411   0.0
CHN284 (CHN284Q) /CSM/CH/CHN2-D/CHN284Q.Seq.d/                       1411   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds.  1411   0.0    1
AC006097|AC006097.1 Homo sapiens chromosome 10 clone CIT987SK-1031G15 map 10q25, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    54   0.008  1
AC004480|AC004480.7 Homo sapiens chromosome 4, WORKING DRAFT SEQUENCE, 7 unordered pieces.    54   0.008  1
AC093323|AC093323.3 Homo sapiens BAC clone RP11-539L10 from 4, complete sequence.    54   0.008  1
AL390197|AL390197.19 Human DNA sequence from clone RP11-190F19 on chromosome 10.    54   0.008  1
AC154396|AC154396.11 Mus musculus chromosome 3, clone RP24-254D5, complete sequence.    36   0.27   2
CX098227|CX098227.1 EHAHI57TR E. histolytica Normalized cDNA library Entamoeba histolytica cDNA, mRNA sequence.    48   0.48   1
CX096781|CX096781.1 EHAGX29TR E. histolytica Normalized cDNA library Entamoeba histolytica cDNA, mRNA sequence.    48   0.48   1
CX080440|CX080440.1 EHAA717TR E. histolytica Normalized cDNA library Entamoeba histolytica cDNA, mRNA sequence.    48   0.48   1
CX080439|CX080439.1 EHAA717TF E. histolytica Normalized cDNA library Entamoeba histolytica cDNA, mRNA sequence.    48   0.48   1
dna update 2006. 1. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U...   483   e-135
CP001279_992(CP001279|pid:none) Nautilia profundicola AmH, compl...    40   0.18
CP001048_907(CP001048|pid:none) Yersinia pseudotuberculosis PB1/...    35   4.4
CP001025_1222(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    35   4.4
CP000431_1654(CP000431|pid:none) Rhodococcus jostii RHA1, comple...    35   7.6
protein update 2009. 4.15
PSORT 

 psg: 0.54  gvh: 0.13  alm: 0.23  top: 0.73  tms: 0.20  mit: 0.42  mip: 0.04
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	 16.0 %: vacuolar
	 12.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: cytoplasmic

>> prediction for SHC267 is pla
5' end seq. ID SHC267F
5' end seq. 
>SHC267F.Seq
GTAGTAATAATATTGGTAGAGATATTGGTAATAATCAAAGTAGTAGAAATTTAAAACCAA
AACCATCACAAAGCAATTTGAAATGGATAGCAAGAGATTTAAAAAAGAAATCTGTTAGAA
AAGATTCAGAGAGAAAGTTAAAGAGTAGTGGTGTTTTAAAGAAAAAGAATACTGTGATGG
ACTTTGGTGAAGATGATGGTGGTAGTGGTGACGATGGTAATATAACCGAGGGTTTACCAA
TTAGTGAAGGTATGGATGATTTACCATCATCTTCAAACTCTCGTGGCGGCAGCGGTAATG
ATGAACAAAAGAAACAGTTCCCAAAGGAAATGAATTCTCCATCATCGGAATATGGCACAA
CAAGTGGCGGTCAAAGATTTGATACATTGGTTGATCCTGATATTAGTTTAGCAGAGATGG
AAGAGAAAATGCGTCAACACAAGGTATACCAAGAGCAACAACAGCAACAACAACAACAGC
AACAACAACAAAAGCAAAAAGATAAAGAGTTGTCATCACAAAAGAAGAAACCATCATCAA
TGCAATTAAGTAAAAAGAAACATGTCGCCAAAGAAGATTCTGAAACATTAGAGACAATCA
TTGGTGAAGAGAAGNNNNNNNNNN
Length of 5' end seq. 624
3' end seq. ID SHC267Z
3' end seq. 
>SHC267Z.Seq
NNNNNNNNNNGGTGCTTCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAA
AGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCAT
TCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACT
TTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTAC
TTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAA
GATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGT
AGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATC
AAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCAT
TAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTAT
GATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGT
AGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCG
TCAAAGTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATT
CT
Length of 3' end seq. 722
Connected seq. ID SHC267P
Connected seq. 
>SHC267P.Seq
GTAGTAATAATATTGGTAGAGATATTGGTAATAATCAAAGTAGTAGAAATTTAAAACCAA
AACCATCACAAAGCAATTTGAAATGGATAGCAAGAGATTTAAAAAAGAAATCTGTTAGAA
AAGATTCAGAGAGAAAGTTAAAGAGTAGTGGTGTTTTAAAGAAAAAGAATACTGTGATGG
ACTTTGGTGAAGATGATGGTGGTAGTGGTGACGATGGTAATATAACCGAGGGTTTACCAA
TTAGTGAAGGTATGGATGATTTACCATCATCTTCAAACTCTCGTGGCGGCAGCGGTAATG
ATGAACAAAAGAAACAGTTCCCAAAGGAAATGAATTCTCCATCATCGGAATATGGCACAA
CAAGTGGCGGTCAAAGATTTGATACATTGGTTGATCCTGATATTAGTTTAGCAGAGATGG
AAGAGAAAATGCGTCAACACAAGGTATACCAAGAGCAACAACAGCAACAACAACAACAGC
AACAACAACAAAAGCAAAAAGATAAAGAGTTGTCATCACAAAAGAAGAAACCATCATCAA
TGCAATTAAGTAAAAAGAAACATGTCGCCAAAGAAGATTCTGAAACATTAGAGACAATCA
TTGGTGAAGAGAAG----------GGTGCTTCTCCATTAATTATGAGTATTTGGACTGTA
CCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTG
TTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAG
AGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTT
GGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTT
CTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTC
GTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGAT
AATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAA
GAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTT
AATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGG
CTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATT
CCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTCAC
AATATTGTTTTATTCT
Length of connected seq. 1326
Full length Seq ID -
Full length Seq. -
Length of full length seq. -