>SHC253 (SHC253Q) /CSM/SH/SHC2-C/SHC253Q.Seq.d/
AAGTTTTACAAAAATGAAAGTAATATATATTTATTTGTTATTATTATTAGTTTGTAAATT
TTTATTTGTTAAATCAAGTTGCTCTTTAAAAGTTGGAAAAATAGAATGTACAAAAGAATT
AGAAACGTTTTTATTATATAATGAAACAGTTGTCAATGTAAAAATGGATACAAATGGAGT
AAAATATTATTTTAATGCACTCGAGTTTCCTTACAAGAATCTGTTATGCGATTTAAATAT
TGATATTAAATTCACACCAGAAATCCCATCATTCCCAAATATACCTACAACAGGTGGAGA
CTTCGGGTTCACCTTCAACTTTCCTTGCGACTATAGGCGAAGAGTCAAACGAATAGAAAT
AGAAAGAACTATATTATCTCTCAGTTTTGATACAAGCAAAAATCAGTTCGTTACTTACTT
GAATCCAGGGTGTGGTCCTTTCAATATTAGTAGTAGTGGGATTCAGATTTTGAGTACAAC
TTATGAAACTGGTGCCATACCCAATGTACCAATTCTCGATGATGATAAAGGTATTTTAXX
XXXXXXXX

SFTKMKVIYIYLLLLLVCKFLFVKSSCSLKVGKIECTKELETFLLYNETVVNVKMDTNGV
KYYFNALEFPYKNLLCDLNIDIKFTPEIPSFPNIPTTGGDFGFTFNFPCDYRRRVKRIEI
ERTILSLSFDTSKNQFVTYLNPGCGPFNISSSGIQILSTTYETGAIPNVPILDDDKGI--
-

Frame A:
kfyknesniylfviiisl*ific*ikllfkswknrmykrirnvfii**nscqckngykws
kilf*ctrvslqesvmrfky*y*ihtrnpiipkytynrwrlrvhlqlslrl*aksqtnrn
rknyiisqf*ykqksvryllesrvwsfqy***wdsdfeynl*nwchtqctnsr***ryf-
--


Frame B:
SFTKMKVIYIYLLLLLVCKFLFVKSSCSLKVGKIECTKELETFLLYNETVVNVKMDTNGV
KYYFNALEFPYKNLLCDLNIDIKFTPEIPSFPNIPTTGGDFGFTFNFPCDYRRRVKRIEI
ERTILSLSFDTSKNQFVTYLNPGCGPFNISSSGIQILSTTYETGAIPNVPILDDDKGI--
-


Frame C:
vlqk*k*yificyyy*fvnfyllnqval*klek*nvqkn*krfyyimkqlsm*kwiqme*
niilmhssfltricyai*ililnshqkshhsqiylqqvetsgspstflatigeesne*k*
kelyylsvliqakissllt*iqgvvlsilvvvgfrf*vqlmklvpypmyqfsmmikvf--
-

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHJ874 (AHJ874Q) /CSM/AH/AHJ8-D/AHJ874Q.Seq.d/                       1066   0.0
SHL286 (SHL286Q) /CSM/SH/SHL2-D/SHL286Q.Seq.d/                       1066   0.0
SHK623 (SHK623Q) /CSM/SH/SHK6-A/SHK623Q.Seq.d/                       1066   0.0
SHK528 (SHK528Q) /CSM/SH/SHK5-B/SHK528Q.Seq.d/                       1066   0.0
SHK268 (SHK268Q) /CSM/SH/SHK2-C/SHK268Q.Seq.d/                       1066   0.0
SHJ796 (SHJ796Q) /CSM/SH/SHJ7-D/SHJ796Q.Seq.d/                       1066   0.0
SHJ471 (SHJ471Q) /CSM/SH/SHJ4-C/SHJ471Q.Seq.d/                       1066   0.0
SHJ290 (SHJ290Q) /CSM/SH/SHJ2-D/SHJ290Q.Seq.d/                       1066   0.0
SHI701 (SHI701Q) /CSM/SH/SHI7-A/SHI701Q.Seq.d/                       1066   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.  1066   0.0    1
CG932447|CG932447.1 MBELN42TF mth2 Medicago truncatula genomic clone 81G12, genomic survey sequence.    42   0.002  2
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           44   0.002  11
AL034557|AL034557.8 Plasmodium falciparum MAL4P1.                  36   0.004  9
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    42   0.006  9
CR954295|CR954295.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-51I11.    44   0.008  6
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   0.009  8
AE014836|AE014836.1 Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence.    34   0.012  10
BX470218|BX470218.10 Zebrafish DNA sequence from clone DKEY-30C15 in linkage group 18.    36   0.012  6
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  36   0.014  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374900_1(FJ374900|pid:none) Dictyostelium discoideum strain QS...   262   4e-69
FJ374891_1(FJ374891|pid:none) Dictyostelium discoideum strain QS...   261   6e-69
FJ374901_1(FJ374901|pid:none) Dictyostelium discoideum strain QS...   260   2e-68
FJ374918_1(FJ374918|pid:none) Dictyostelium discoideum strain QS...   260   2e-68
FJ374915_1(FJ374915|pid:none) Dictyostelium discoideum strain QS...   259   2e-68
FJ374895_1(FJ374895|pid:none) Dictyostelium discoideum strain QS...   259   2e-68
FJ374893_1(FJ374893|pid:none) Dictyostelium discoideum strain QS...   259   2e-68
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...   256   2e-67
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS...   256   3e-67
FJ374912_1(FJ374912|pid:none) Dictyostelium discoideum strain QS...   256   3e-67

 psg: 0.95  gvh: 0.68  alm: 0.49  top: 0.60  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 24.0 %: nuclear
	 20.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 16.0 %: extracellular, including cell wall
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: endoplasmic reticulum

>> prediction for SHC253 is nuc

>SHC253F.Seq
AAGTTTTACAAAAATGAAAGTAATATATATTTATTTGTTATTATTATTAGTTTGTAAATT
TTTATTTGTTAAATCAAGTTGCTCTTTAAAAGTTGGAAAAATAGAATGTACAAAAGAATT
AGAAACGTTTTTATTATATAATGAAACAGTTGTCAATGTAAAAATGGATACAAATGGAGT
AAAATATTATTTTAATGCACTCGAGTTTCCTTACAAGAATCTGTTATGCGATTTAAATAT
TGATATTAAATTCACACCAGAAATCCCATCATTCCCAAATATACCTACAACAGGTGGAGA
CTTCGGGTTCACCTTCAACTTTCCTTGCGACTATAGGCGAAGAGTCAAACGAATAGAAAT
AGAAAGAACTATATTATCTCTCAGTTTTGATACAAGCAAAAATCAGTTCGTTACTTACTT
GAATCCAGGGTGTGGTCCTTTCAATATTAGTAGTAGTGGGATTCAGATTTTGAGTACAAC
TTATGAAACTGGTGCCATACCCAATGTACCAATTCTCGATGATGATAAAGGTATTTTANN
NNNNNNNN