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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHC251
Library SH
(Link to library)
Clone ID SHC251
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHC251P
(Link to Original site)
Representative DNA sequence 
>SHC251 (SHC251Q) /CSM/SH/SHC2-C/SHC251Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAA
CAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGAT
GAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCT
AAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAA
TTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGA
CAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATC
AAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCT
GTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAAT
AATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAA
ATTAAAAATCAATTAAAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---SHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQD
AAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLK
VIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSP
DQIKNQLKN
Translated Amino Acid sequence (All Frames) 
Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnk
mllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnl
klsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnl
ltklkin*ki

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---ls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*tr
cc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*
syqrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssrettis
*pn*ksikk

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---SHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQD
AAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLK
VIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSP
DQIKNQLKN
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP272 (VHP272Q) /CSM/VH/VHP2-C/VHP272Q.Seq.d/                        555   e-157
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        555   e-157
SHL890 (SHL890Q) /CSM/SH/SHL8-D/SHL890Q.Seq.d/                        555   e-157
SHL879 (SHL879Q) /CSM/SH/SHL8-D/SHL879Q.Seq.d/                        555   e-157
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        555   e-157
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        555   e-157
SHL865 (SHL865Q) /CSM/SH/SHL8-C/SHL865Q.Seq.d/                        555   e-157
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        555   e-157
SHL829 (SHL829Q) /CSM/SH/SHL8-B/SHL829Q.Seq.d/                        555   e-157
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        555   e-157
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   555   0.0    4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   3e-25  1
BX936312|BX936312.12 Zebrafish DNA sequence from clone DKEY-204O5 in linkage group 7.    42   0.091  5
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.11   6
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.24   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.24   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.24   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.24   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.24   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.24   1
dna update 2006. 1. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   225   8e-58
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.5
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   2.6
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   5.7
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   7.5
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   7.5
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote...    33   7.5
AE016819_111(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    33   9.8
(P47048) RecName: Full=Uncharacterized protein YJL049W;  &AY6926...    33   9.8
protein update 2009. 4.15
PSORT 

 psg: 0.58  gvh: 0.16  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHC251 is nuc
5' end seq. ID SHC251F
5' end seq. 
>SHC251F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID SHC251Z
3' end seq. 
>SHC251Z.Seq
NNNNNNNNNNACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATT
ACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAA
GATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAA
GATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAA
GAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAA
CAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTT
AAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAG
AACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTG
GCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCT
CCTGACCAAATTAAAAATCAATTAAAAAATA
Length of 3' end seq. 571
Connected seq. ID SHC251P
Connected seq. 
>SHC251P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-ACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAA
CAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGAT
GAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCT
AAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAA
TTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGA
CAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATC
AAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCT
GTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAAT
AATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAA
ATTAAAAATCAATTAAAAAATA
Length of connected seq. 672
Full length Seq ID -
Full length Seq. -
Length of full length seq. -