>SHC248 (SHC248Q) /CSM/SH/SHC2-B/SHC248Q.Seq.d/
XXXXXXXXXXATCAATTGAAAATGATTGTTGAAAAAGAGAATCAAATTCAACAATNGCAA
TCNCAATTAAATGACCAAAGCCACCACCAATCAAATCAGTTGTCTGAAAAAGATCAACAA
TTGAATCAATTAATTGAAAAGAATGAATCTGATCAAAAAGANCAACAATTAAAACAACAA
TCAATTGAAAATGATTTAATTGAAAAAGAGAATCAAATTCAACAATTACAATTACAATTA
AATGAACAAAGACAACTACAATCTGAAGTATCAATTGATAATGATAAAATTTTAGAATTA
GAAAAACAATTAAAACAATGTCAATCGGATTTATTGAAATTAAATGATGAAAAACAACAA
CAAGATAAACAATTACAAGATAAACAAATTGGATTTGATCAATTACAATTAACTTTTAAT
CAATTTAAAAATGATAAAGATTCACAATTCATTCAATTACAAGATGATCAAAAACAACAA
TTACAATCAATCCAACAAGATTTAAATCAATTAAAACAAGAAAATCAAGAAAAAGAAAAA
CAACTCTCTGAAAAGGATGAAAAATTACAATCAATTCAACTTGAGAATCAAGAAAAAGAA
AAACAACTCTCTGAAAAGGATGAAAAGTTACAATCAATTCAACAAAATTTAAATCAATTA
AATGATGAAAATCAAGAAAAAGTAAAACAATTTTCTGAAAAAGANGAAAAGCCCCAATCN
GATTCANC

---QLKMIVEKENQIQQXQSQLNDQSHHQSNQLSEKDQQLNQLIEKNESDQKXQQLKQQS
IENDLIEKENQIQQLQLQLNEQRQLQSEVSIDNDKILELEKQLKQCQSDLLKLNDEKQQQ
DKQLQDKQIGFDQLQLTFNQFKNDKDSQFIQLQDDQKQQLQSIQQDLNQLKQENQEKEKQ
LSEKDEKLQSIQLENQEKEKQLSEKDEKLQSIQQNLNQLNDENQEKVKQFSEKXEKPQSD
S

Frame A:
---siendc*kresnstxaixik*pkpppiksvv*krstiesin*ke*i*skrxtiktti
n*k*fn*kresnstititik*tkttti*sin****nfrirktiktmsigfieik**kttt
r*titr*tnwi*sitinf*si*k**rftihsitr*skttitinptrfksiktrksrkrkt
tl*kg*kitinst*esrkrkttl*kg*kvtinstkfksik**ksrksktif*krxkapix
fx


Frame B:
---QLKMIVEKENQIQQXQSQLNDQSHHQSNQLSEKDQQLNQLIEKNESDQKXQQLKQQS
IENDLIEKENQIQQLQLQLNEQRQLQSEVSIDNDKILELEKQLKQCQSDLLKLNDEKQQQ
DKQLQDKQIGFDQLQLTFNQFKNDKDSQFIQLQDDQKQQLQSIQQDLNQLKQENQEKEKQ
LSEKDEKLQSIQLENQEKEKQLSEKDEKLQSIQQNLNQLNDENQEKVKQFSEKXEKPQSD
S


Frame C:
---n*k*llkkrikfnnxnxn*mtkattnqisclkkinn*in*lkrmnlikkxnn*nnnq
lkmi*lkkrikfnnynyn*mnkdnynlkyqlimikf*n*knn*nnvnriy*n*mmknnnk
innykinkldlinyn*llinlkmikihnsfnykmiknnnynqsnki*in*nkkikkkknn
slkrmknynqfnlrikkkknnslkrmksynqfnki*in*mmkikkk*nnflkkxkspnxi
x

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHC248 (SHC248Q) /CSM/SH/SHC2-B/SHC248Q.Seq.d/                        916   0.0
SHA355 (SHA355Q) /CSM/SH/SHA3-C/SHA355Q.Seq.d/                        880   0.0
AFL480 (AFL480Q) /CSM/AF/AFL4-D/AFL480Q.Seq.d/                        829   0.0
CHN274 (CHN274Q) /CSM/CH/CHN2-D/CHN274Q.Seq.d/                        339   4e-92
AHH728 (AHH728Q) /CSM/AH/AHH7-B/AHH728Q.Seq.d/                        252   6e-66
SSL560 (SSL560Q) /CSM/SS/SSL5-C/SSL560Q.Seq.d/                        147   3e-34
AHG872 (AHG872Q) /CSM/AH/AHG8-C/AHG872Q.Seq.d/                        147   3e-34
SFI145 (SFI145Q) /CSM/SF/SFI1-B/SFI145Q.Seq.d/                         46   7e-04
VSH461 (VSH461Q) /CSM/VS/VSH4-C/VSH461Q.Seq.d/                         44   0.003
SSK153 (SSK153Q) /CSM/SS/SSK1-C/SSK153Q.Seq.d/                         44   0.003

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF057019|AF057019.1 Dictyostelium discoideum interaptin (abpD) gene, complete cds.   841   0.0    3
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    46   8e-12  13
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   7e-08  15
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   2e-06  14
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    40   8e-06  12
U42409|U42409.1 Dictyostelium discoideum myosin heavy chain (myoJ) gene, complete cds.    38   2e-05  6
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   4e-05  15
AE002141|AE002141.1 Ureaplasma urealyticum section 42 of 59 of the complete genome.    38   5e-05  4
CP000123|CP000123.1 Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome.    46   6e-05  16
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    36   2e-04  8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B...   149   1e-34

 psg: 0.65  gvh: 0.26  alm: 0.67  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SHC248 is nuc

>SHC248Z.Seq
NNNNNNNNNNATCAATTGAAAATGATTGTTGAAAAAGAGAATCAAATTCAACAATNGCAA
TCNCAATTAAATGACCAAAGCCACCACCAATCAAATCAGTTGTCTGAAAAAGATCAACAA
TTGAATCAATTAATTGAAAAGAATGAATCTGATCAAAAAGANCAACAATTAAAACAACAA
TCAATTGAAAATGATTTAATTGAAAAAGAGAATCAAATTCAACAATTACAATTACAATTA
AATGAACAAAGACAACTACAATCTGAAGTATCAATTGATAATGATAAAATTTTAGAATTA
GAAAAACAATTAAAACAATGTCAATCGGATTTATTGAAATTAAATGATGAAAAACAACAA
CAAGATAAACAATTACAAGATAAACAAATTGGATTTGATCAATTACAATTAACTTTTAAT
CAATTTAAAAATGATAAAGATTCACAATTCATTCAATTACAAGATGATCAAAAACAACAA
TTACAATCAATCCAACAAGATTTAAATCAATTAAAACAAGAAAATCAAGAAAAAGAAAAA
CAACTCTCTGAAAAGGATGAAAAATTACAATCAATTCAACTTGAGAATCAAGAAAAAGAA
AAACAACTCTCTGAAAAGGATGAAAAGTTACAATCAATTCAACAAAATTTAAATCAATTA
AATGATGAAAATCAAGAAAAAGTAAAACAATTTTCTGAAAAAGANGAAAAGCCCCAATCN
GATTCANC