>SHC243 (SHC243Q) /CSM/SH/SHC2-B/SHC243Q.Seq.d/
ATCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCT
TTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAA
AAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCT
CCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAAT
CTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATG
GCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCA
GATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAA
TCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTA
TACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGC
TCATATTTAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAA
CCTTTTGTTGTTAAAGGTAATTTCTCTGATCCATCTTTTGACTGTXXXXXXXXXXACAAA
GAATTCAAAGTTAATGTAAAATCAAATAATAAAAATACCACAGTATTTGCTCAAGATGAA
AAGATATTAATAGTTAGAGATGAAAGTAGAGAGAGTTCACTCTTTGTTACAACATTCATT
GGAGTTCGTTCAGGACCAAGTACAACATTGACCTATATAAAACCAATGATTTCAGAAATT
CCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTT
ACAGATATTCTCAATGCAAGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAAT
TTAGAATGTAGTTTATCACCAAATGAAATACTTGATGATAGTGATTCAAGTGAAACTAAT
ATTACAAATAGTAATACTGATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAAAATACA
TCAGGAGTATTATATCTCCTATTTAACTCAACATCATTTCAATATAATGTCACAATTGAA
GAAATTAAATTATCTCCATCACCAAACGTTAGTCAAAGAGATGTTGAAACTAAATCATCC
AAACCATCAAATGGTTTAATAATAGGTTCTACAATTGGTAGTGTTGGTGGTGCTCTTGCT
ATCGGTGCTCTTGCCTATTACTTTAAAATACCTTTTCGTGTGAAAAAATTTATAGGTAAA
AAATTTTAAAAAAAAATGTAAATTTAAAATCACAAATCACATATGTGTAAAATTAAAACT
TAAC

iylikikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISGYSMNP
PTPIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHS
DEPFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITG
SYLRLFGGPNFLINSIDVNKPFVVKGNFSDPSFDC---

---KEFKVNVKSNNKNTTVFAQDEKILIVRDESRESSLFVTTFIGVRSGPSTTLTYIKPM
ISEIPTIENKIEKGILAIIRGYSFTDILNASLTVSSETVPLSCNLECSLSPNEILDDSDS
SETNITNSNTDCLSCHSGSSVKNTSGVLYLLFNSTSFQYNVTIEEIKLSPSPNVSQRDVE
TKSSKPSNGLIIGSTIGSVGGALAIGALAYYFKIPFRVKKFIGKKF*kkm*i*nhkshmc
kikt*

Frame A:
iylikikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISGYSMNP
PTPIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHS
DEPFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITG
SYLRLFGGPNFLINSIDVNKPFVVKGNFSDPSFDC---

---tknsklm*nqiikipqyllkmkry**lemkvervhsllqhslefvqdqvqh*pi*nq
*fqkfqplkiklkkvf*q*fvvivlqifsmqa*qfhqklflfhvi*nvvyhqmkylmivi
qvklilqivilivyhaipvqv*kihqeyyisyltqhhfnimsqlkklnylhhqtlvkeml
klnhpnhqmv***vlqlvvlvvlllsvllpitlkylfv*knl*vknfkkkckfkitnhic
vklkln

Frame B:
si**klnfpkiikflffnfll*kllksqiqnkknh**kwkrk*yy*fyfcslyqdiq*il
qhq*mqymminhlh*flivishilpv*fciktkknpelkwhqiisivl*lmerdivysiq
mnhsqdygvv*tvryvleinqillrivhlmlrv*yiiqkyti*nivknqkhlvki*slla
hi*dylvvlislliplm*inllllkvislihllt---

---qriqs*ckik**kyhsicsr*kdins*r*k*reftlcynihwssfrtkynidlyktn
dfrnsnh*k*n*kryfsnnswl*fyrysqcklnsfirncssfm*frm*fitk*nt****f
k*n*yyk**y*lfimpfrfkcekyirsiispi*lniisi*chn*rn*iisitkr*skrc*
n*iiqtikwfnnrfynw*cwwcscyrcsclll*ntfscekiyr*kilkknvnlksqityv
*n*nl

Frame C:
lfnkn*iflk*lnfsfliffykny*kakfkikkiidkngkennitdfifvlyirifness
ntnrcni***iiyinf***spifypfnfv*krkrtqn*ngtklfqlfss*wretlfipfr
*tilkimg*yrq*gmc*r*ikyc*glyi*cfgfsilsksiqfei**ktkniw*ryshywl
ifkiiwws*fpy*fh*ck*tfcc*r*fl*sif*l---

---KEFKVNVKSNNKNTTVFAQDEKILIVRDESRESSLFVTTFIGVRSGPSTTLTYIKPM
ISEIPTIENKIEKGILAIIRGYSFTDILNASLTVSSETVPLSCNLECSLSPNEILDDSDS
SETNITNSNTDCLSCHSGSSVKNTSGVLYLLFNSTSFQYNVTIEEIKLSPSPNVSQRDVE
TKSSKPSNGLIIGSTIGSVGGALAIGALAYYFKIPFRVKKFIGKKF*kkm*i*nhkshmc
kikt*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHC243 (SHC243Q) /CSM/SH/SHC2-B/SHC243Q.Seq.d/                       1509   0.0
SHD571 (SHD571Q) /CSM/SH/SHD5-C/SHD571Q.Seq.d/                       1279   0.0
CHG218 (CHG218Q) /CSM/CH/CHG2-A/CHG218Q.Seq.d/                       1279   0.0
AHQ216 (AHQ216Q) /CSM/AH/AHQ2-A/AHQ216Q.Seq.d/                       1279   0.0
AHP270 (AHP270Q) /CSM/AH/AHP2-C/AHP270Q.Seq.d/                       1279   0.0
AHO612 (AHO612Q) /CSM/AH/AHO6-A/AHO612Q.Seq.d/                       1279   0.0
AHO174 (AHO174Q) /CSM/AH/AHO1-D/AHO174Q.Seq.d/                       1279   0.0
AHM883 (AHM883Q) /CSM/AH/AHM8-D/AHM883Q.Seq.d/                       1279   0.0
AHM102 (AHM102Q) /CSM/AH/AHM1-A/AHM102Q.Seq.d/                       1279   0.0
AHL692 (AHL692Q) /CSM/AH/AHL6-D/AHL692Q.Seq.d/                       1279   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds.  1283   0.0    1
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.  1283   0.0    1
AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.    80   1e-37  8
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    46   9e-04  2
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34   0.071  11
AC146777|AC146777.27 Medicago truncatula clone mth2-173c10, complete sequence.    36   0.11   7
AC094308|AC094308.10 Rattus norvegicus clone CH230-3G2, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50   0.13   1
BX957222|BX957222.1 Methanococcus maripaludis S2 complete genome; segment 4/5.    34   0.27   10
CT025578|CT025578.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36   0.27   2
CT573049|CT573049.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-18H22.    36   0.27   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A54280(A54280) cell differentiation protein LagC precursor - sli...   358   2e-97
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...   349   1e-94
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...   349   1e-94
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS...   349   1e-94
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS...   349   1e-94
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS...   349   1e-94
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS...   348   3e-94
FJ374928_1(FJ374928|pid:none) Dictyostelium discoideum strain QS...   333   8e-90
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS...   333   8e-90
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS...   333   8e-90

 psg: 1.02  gvh: 0.77  alm: 0.34  top: 0.07  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 20.0 %: cytoplasmic
	 12.0 %: vacuolar
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for SHC243 is exc

>SHC243F.Seq
ATCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCT
TTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAA
AAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCT
CCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAAT
CTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATG
GCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCA
GATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAA
TCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTA
TACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGC
TCATATTTAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAA
CCTTTTGTTGTTAAAGGTAATTTCTCTGATCCATCTTTTGACTGTNNNNNNNNNN

>SHC243Z.Seq
NNNNNNNNNNACAAAGAATTCAAAGTTAATGTAAAATCAAATAATAAAAATACCACAGTA
TTTGCTCAAGATGAAAAGATATTAATAGTTAGAGATGAAAGTAGAGAGAGTTCACTCTTT
GTTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTATATAAAACCA
ATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAGCAATAATT
CGTGGTTATAGTTTTACAGATATTCTCAATGCAAGCTTAACAGTTTCATCAGAAACTGTT
CCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTTGATGATAGTGAT
TCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCATTCCGGTTCA
AGTGTGAAAAATACATCAGGAGTATTATATCTCCTATTTAACTCAACATCATTTCAATAT
AATGTCACAATTGAAGAAATTAAATTATCTCCATCACCAAACGTTAGTCAAAGAGATGTT
GAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTCTACAATTGGTAGTGTT
GGTGGTGCTCTTGCTATCGGTGCTCTTGCCTATTACTTTAAAATACCTTTTCGTGTGAAA
AAATTTATAGGTAAAAAATTTTAAAAAAAAATGTAAATTTAAAATCACAAATCACATATG
TGTAAAATTAAAACTTAAC

>SHC243P.Seq
ATCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCT
TTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAA
AAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCT
CCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAAT
CTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATG
GCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCA
GATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAA
TCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTA
TACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGC
TCATATTTAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAA
CCTTTTGTTGTTAAAGGTAATTTCTCTGATCCATCTTTTGACTGT----------ACAAA
GAATTCAAAGTTAATGTAAAATCAAATAATAAAAATACCACAGTATTTGCTCAAGATGAA
AAGATATTAATAGTTAGAGATGAAAGTAGAGAGAGTTCACTCTTTGTTACAACATTCATT
GGAGTTCGTTCAGGACCAAGTACAACATTGACCTATATAAAACCAATGATTTCAGAAATT
CCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTT
ACAGATATTCTCAATGCAAGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAAT
TTAGAATGTAGTTTATCACCAAATGAAATACTTGATGATAGTGATTCAAGTGAAACTAAT
ATTACAAATAGTAATACTGATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAAAATACA
TCAGGAGTATTATATCTCCTATTTAACTCAACATCATTTCAATATAATGTCACAATTGAA
GAAATTAAATTATCTCCATCACCAAACGTTAGTCAAAGAGATGTTGAAACTAAATCATCC
AAACCATCAAATGGTTTAATAATAGGTTCTACAATTGGTAGTGTTGGTGGTGCTCTTGCT
ATCGGTGCTCTTGCCTATTACTTTAAAATACCTTTTCGTGTGAAAAAATTTATAGGTAAA
AAATTTTAAAAAAAAATGTAAATTTAAAATCACAAATCACATATGTGTAAAATTAAAACT
TAAC