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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHC218
Library SH
(Link to library)
Clone ID SHC218
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16586-1
Original site URL
Representative seq. ID SHC218P
(Link to Original site)
Representative DNA sequence 
>SHC218 (SHC218Q) /CSM/SH/SHC2-A/SHC218Q.Seq.d/
AATCTCTACCATACCTTTCAATCGTTTATTCATCCCTTATCAAAAACACACACACACACA
TATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAAAATANCAATA
ATAATAATAATTTTTTAAAAATAAAANGATAAAAAAATAAAANCAAATTAAAAAATAATT
TAATAATAATAATTTTTCNTTTATAAAGAAGACAANCAAATAAAAAAAATAAAATAATAA
ATAAANTTTAAAAAAAAAAXXXXXXXXXXACTGGTGATGTCGGTCATATCGATAAGGATG
GTTTCATTTTCATCACCGATAGAAAGAAAGAGTTAATCATTACAGCAGGTGGTGAAAATA
TTTCACCAACCTTGATTGAAGGTTTCATTCGTCAAATCATTGGTGTTGAACAAGCCGTAG
TAATTGGTGATCGTCAAAAATATTTAGTTGCTTTGGTCACTGTCAATGCTGATTTATTCA
AGTTATTACCAGGTCAAGGTTACACTCATCCATTACCAAAATCAATGGAAGAAGCTTCAA
CAGATAAACATTTCATTGCCTATATTGATTCTCAAATGAAAGATATTAATTCAAAACTTC
CAAATGTTTCAACAATTAAAAAAGTTAAAATTTTACCAGTTGAATTCCAAGAAACTGGTG
AAACTTCTG
sequence update 2002.10.25
Translated Amino Acid sequence 
nlyhtfqsfihplskththtyiykinlllfichkkkkixiiiiif*k*xdkkikxn*kii
****ffxykedxqikkik**IXFKKK---

---TGDVGHIDKDGFIFITDRKKELIITAGGENISPTLIEGFIRQIIGVEQAVVIGDRQK
YLVALVTVNADLFKLLPGQGYTHPLPKSMEEASTDKHFIAYIDSQMKDINSKLPNVSTIK
KVKILPVEFQETGETS
Translated Amino Acid sequence (All Frames) 
Frame A:
nlyhtfqsfihplskththtyiykinlllfichkkkkixiiiiif*k*xdkkikxn*kii
****ffxykedxqikkik**IXFKKK---

---TGDVGHIDKDGFIFITDRKKELIITAGGENISPTLIEGFIRQIIGVEQAVVIGDRQK
YLVALVTVNADLFKLLPGQGYTHPLPKSMEEASTDKHFIAYIDSQMKDINSKLPNVSTIK
KVKILPVEFQETGETS

Frame B:
istipfnrlfipyqkhththiyikliyyflfvikkkkxq****ffknkxikk*xqikk*f
nnnnfsfikktxk*kk*nnk*xlkkk---

---lvmsvisirmvsfsspierks*slqqvvkifhqp*lkvsfvkslvlnkp**lvivkn
i*llwslsmliyssyyqvkvtlihyqnqwkklqqinislpililk*kiliqnfqmfqqlk
klkfyqlnskklvkll

Frame C:
slpylsivyssliknththiyi*n*fitfyls*kkknxnnnnnflkikx*knkxklknnl
iiiifxl*rrqxnkknkiinkx*kk---

---w*crsyr*gwfhfhhr*kervnhysrw*kyftnld*rfhssnhwc*tsrsnw*sski
fscfghcqc*fiqvitrsrlhssitkingrsfnr*tfhcly*fsnery*fktskcfnn*k
s*nfts*iprnw*nf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB722 (VHB722Q) /CSM/VH/VHB7-A/VHB722Q.Seq.d/                        793   0.0
VHB563 (VHB563Q) /CSM/VH/VHB5-C/VHB563Q.Seq.d/                        793   0.0
SHJ871 (SHJ871Q) /CSM/SH/SHJ8-C/SHJ871Q.Seq.d/                        793   0.0
SHC218 (SHC218Q) /CSM/SH/SHC2-A/SHC218Q.Seq.d/                        793   0.0
CHN456 (CHN456Q) /CSM/CH/CHN4-C/CHN456Q.Seq.d/                        793   0.0
AHD785 (AHD785Q) /CSM/AH/AHD7-D/AHD785Q.Seq.d/                        793   0.0
VHA335 (VHA335Q) /CSM/VH/VHA3-B/VHA335Q.Seq.d/                        791   0.0
AHF157 (AHF157Q) /CSM/AH/AHF1-C/AHF157Q.Seq.d/                        791   0.0
VHQ345 (VHQ345Q) /CSM/VH/VHQ3-B/VHQ345Q.Seq.d/                        787   0.0
CHG165 (CHG165Q) /CSM/CH/CHG1-C/CHG165Q.Seq.d/                        785   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX548045|BX548045.6 Zebrafish DNA sequence from clone DKEY-224A6 in linkage group 17.    46   0.002  2
BX927226|BX927226.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-6J23.    46   0.002  2
DV182098|DV182098.1 EST-161-5 Young leaves inoculated with powdery mildew pathogen (Uncinula necator) cDNA library of Chinese wild grape Vitis pseudoreticulata cDNA 5', mRNA sequence.    52   0.015  1
AY380826|AY380826.1 Lymphocystis disease virus - isolate China, complete genome.    42   0.44   5
BX511114|BX511114.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36   0.49   2
BX511083|BX511083.17 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-195F22.    36   0.49   2
CR392341|CR392341.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-222E20.    46   0.93   1
CR848039|CR848039.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-232H12.    46   0.93   1
CT025935|CT025935.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-276P18.    46   0.93   1
CR354609|CR354609.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-123A1.    46   0.93   1
dna update 2005.12.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE000516_2307(AE000516|pid:none) Mycobacterium tuberculosis CDC1...   102   1e-20
AM408590_2207(AM408590|pid:none) Mycobacterium bovis BCG Pasteur...   102   1e-20
BX842579_25(BX842579|pid:none) Mycobacterium tuberculosis H37Rv ...   102   1e-20
AL022602_30(AL022602|pid:none) Mycobacterium leprae cosmid B268.      100   3e-20
A87020(A87020) probable long-chain-fatty-acid-CoA ligase [import...   100   3e-20
CP000656_2943(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...    99   1e-19
CP000480_4107(CP000480|pid:none) Mycobacterium smegmatis str. MC...    98   2e-19
CP000431_5975(CP000431|pid:none) Rhodococcus jostii RHA1, comple...    96   7e-19
AP006618_4722(AP006618|pid:none) Nocardia farcinica IFM 10152 DN...    96   9e-19
CP001341_1533(CP001341|pid:none) Arthrobacter chlorophenolicus A...    96   1e-18
protein update 2009. 4.15
PSORT 

 psg: 0.52  gvh: 0.47  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SHC218 is nuc
5' end seq. ID SHC218F
5' end seq. 
>SHC218F.Seq
AATCTCTACCATACCTTTCAATCGTTTATTCATCCCTTATCAAAAACACACACACACACA
TATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAAAATANCAATA
ATAATAATAATTTTTTAAAAATAAAANGATAAAAAAATAAAANCAAATTAAAAAATAATT
TAATAATAATAATTTTTCNTTTATAAAGAAGACAANCAAATAAAAAAAATAAAATAATAA
ATAAANTTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 269
3' end seq. ID SHC218Z
3' end seq. 
>SHC218Z.Seq
NNNNNNNNNNACTGGTGATGTCGGTCATATCGATAAGGATGGTTTCATTTTCATCACCGA
TAGAAAGAAAGAGTTAATCATTACAGCAGGTGGTGAAAATATTTCACCAACCTTGATTGA
AGGTTTCATTCGTCAAATCATTGGTGTTGAACAAGCCGTAGTAATTGGTGATCGTCAAAA
ATATTTAGTTGCTTTGGTCACTGTCAATGCTGATTTATTCAAGTTATTACCAGGTCAAGG
TTACACTCATCCATTACCAAAATCAATGGAAGAAGCTTCAACAGATAAACATTTCATTGC
CTATATTGATTCTCAAATGAAAGATATTAATTCAAAACTTCCAAATGTTTCAACAATTAA
AAAAGTTAAAATTTTACCAGTTGAATTCCAAGAAACTGGTGAAACTTCTG
Length of 3' end seq. 410
Connected seq. ID SHC218P
Connected seq. 
>SHC218P.Seq
AATCTCTACCATACCTTTCAATCGTTTATTCATCCCTTATCAAAAACACACACACACACA
TATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAAAAAAAAAAAATANCAATA
ATAATAATAATTTTTTAAAAATAAAANGATAAAAAAATAAAANCAAATTAAAAAATAATT
TAATAATAATAATTTTTCNTTTATAAAGAAGACAANCAAATAAAAAAAATAAAATAATAA
ATAAANTTTAAAAAAAAAA----------ACTGGTGATGTCGGTCATATCGATAAGGATG
GTTTCATTTTCATCACCGATAGAAAGAAAGAGTTAATCATTACAGCAGGTGGTGAAAATA
TTTCACCAACCTTGATTGAAGGTTTCATTCGTCAAATCATTGGTGTTGAACAAGCCGTAG
TAATTGGTGATCGTCAAAAATATTTAGTTGCTTTGGTCACTGTCAATGCTGATTTATTCA
AGTTATTACCAGGTCAAGGTTACACTCATCCATTACCAAAATCAATGGAAGAAGCTTCAA
CAGATAAACATTTCATTGCCTATATTGATTCTCAAATGAAAGATATTAATTCAAAACTTC
CAAATGTTTCAACAATTAAAAAAGTTAAAATTTTACCAGTTGAATTCCAAGAAACTGGTG
AAACTTCTG
Length of connected seq. 659
Full length Seq ID -
Full length Seq. -
Length of full length seq. -