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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHC201
Library SH
(Link to library)
Clone ID SHC201
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16405-1
Original site URL
Representative seq. ID SHC201P
(Link to Original site)
Representative DNA sequence 
>SHC201 (SHC201Q) /CSM/SH/SHC2-A/SHC201Q.Seq.d/
AAAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCTTTTATAAAA
ATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAGAAAATA
ATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAACACCA
ATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCCATAT
TCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACCAAAT
TATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGAACCA
TTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAATACT
GTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAATTTG
AAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATATTTA
AGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTGXX
XXXXXXXXCAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTATATAAA
ACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAGCAAT
AATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCATCAGAAAC
TGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTTGATGATAG
TGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCATTCCGG
TTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACTCAACATCATTTCA
ATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAAACGTTAGTCAAANAGA
TGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTNTACAATTGGTAG
TGTTGGTGGTGCTCTTGCTATCGGTGCTCTTGCCTATTACTTTAAAATACCNTTTCGTGT
GAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATCACAAATCA
CATATGTGTAAAATTAAAACTTAACTAAAAATAAAATAAATAAATAAATAAATAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
kkikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISGYSMNPPTP
IDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHSDEP
FSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITGSYL
RLFGGPNFLINSIDVNKPF---

---TFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDIXNASLTVSSET
VPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYXLFNSTSFQ
YNVTIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIGSVGGALAIGALAYYFKIPFRV
KKFIGKKF*kkkckfkitnhicvklkln*k*nk*ink*
Translated Amino Acid sequence (All Frames) 
Frame A:
kkikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISGYSMNPPTP
IDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERHCLFHSDEP
FSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGEDIVITGSYL
RLFGGPNFLINSIDVNKPF---

---qhslefvqdqvqh*pi*nq*fqkfqplkiklkkvf*q*fvvivlqixsmqa*qfhqk
lflfhvi*nvvyhqmkylmiviqvklilqivilivyhaipvqv*kihqeyyxsyltqhhf
nimsqlkklnyxhhqtlvkxmlklnhpnhqmv***vxqlvvlvvlllsvllpitlkyxfv
*knl*vknfkkknvnlksqityv*n*nltknkink*ink

Frame B:
kklnfpkiikflffnfll*kllksqiqnkknh**kwkrk*yy*fyfcslyqdiq*ilqhq
*mqymminhlh*flivishilpv*fciktkknpelkwhqiisivl*lmerdivysiqmnh
sqdygvv*tvryvleinqillrivhlmlrv*yiiqkyti*nivknqkhlvki*sllahi*
dylvvlislliplm*inll---

---nihwssfrtkynidlyktndfrnsnh*k*n*kryfsnnswl*fyryxqcklnsfirn
cssfm*frm*fitk*nt****fk*n*yyk**y*lfimpfrfkcekyirsiixpi*lniis
i*chn*rn*ixsitkr*sxrc*n*iiqtikwfnnrxynw*cwwcscyrcsclll*ntxsc
ekiyr*kilkkkm*i*nhkshmckikt*lkik*ink*in

Frame C:
kn*iflk*lnfsfliffykny*kakfkikkiidkngkennitdfifvlyirifnessntn
rcni***iiyinf***spifypfnfv*krkrtqn*ngtklfqlfss*wretlfipfr*ti
lkimg*yrq*gmc*r*ikyc*glyi*cfgfsilsksiqfei**ktkniw*ryshywlifk
iiwws*fpy*fh*ck*tf---

---TFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTDIXNASLTVSSET
VPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSGVLYXLFNSTSFQ
YNVTIEEIKLXPSPNVSQXDVETKSSKPSNGLIIGXTIGSVGGALAIGALAYYFKIPFRV
KKFIGKKF*kkkckfkitnhicvklkln*k*nk*ink*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHC201 (SHC201Q) /CSM/SH/SHC2-A/SHC201Q.Seq.d/                       1172   0.0
SHJ608 (SHJ608Q) /CSM/SH/SHJ6-A/SHJ608Q.Seq.d/                       1021   0.0
SHJ589 (SHJ589Q) /CSM/SH/SHJ5-D/SHJ589Q.Seq.d/                       1021   0.0
SHE141 (SHE141Q) /CSM/SH/SHE1-B/SHE141Q.Seq.d/                       1021   0.0
SHC854 (SHC854Q) /CSM/SH/SHC8-C/SHC854Q.Seq.d/                       1021   0.0
SHC758 (SHC758Q) /CSM/SH/SHC7-C/SHC758Q.Seq.d/                       1021   0.0
SHC478 (SHC478Q) /CSM/SH/SHC4-D/SHC478Q.Seq.d/                       1021   0.0
SHC410 (SHC410Q) /CSM/SH/SHC4-A/SHC410Q.Seq.d/                       1021   0.0
SHC243 (SHC243Q) /CSM/SH/SHC2-B/SHC243Q.Seq.d/                       1021   0.0
SHB354 (SHB354Q) /CSM/SH/SHB3-C/SHB354Q.Seq.d/                       1021   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds.  1021   0.0    3
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.  1021   0.0    4
AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.    80   6e-26  5
AC094308|AC094308.10 Rattus norvegicus clone CH230-3G2, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50   0.11   1
AL935175|AL935175.6 Mouse DNA sequence from clone RP23-397E13 on chromosome 2.    38   0.13   5
AC146777|AC146777.27 Medicago truncatula clone mth2-173c10, complete sequence.    36   0.19   7
CT025578|CT025578.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36   0.25   2
CT573049|CT573049.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-18H22.    36   0.25   2
BX255889|BX255889.7 Zebrafish DNA sequence from clone CH211-270O7 in linkage group 17.    36   0.25   2
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    32   0.61   11
dna update 2005.12.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A54280(A54280) cell differentiation protein LagC precursor - sli...   315   2e-84
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...   298   3e-79
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...   298   3e-79
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS...   298   3e-79
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS...   298   3e-79
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS...   298   3e-79
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS...   296   7e-79
FJ374928_1(FJ374928|pid:none) Dictyostelium discoideum strain QS...   284   4e-75
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS...   284   4e-75
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS...   284   4e-75
protein update 2009. 4.15
PSORT 

 psg: 1.02  gvh: 0.77  alm: 0.33  top: 0.07  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 20.0 %: cytoplasmic
	 12.0 %: vacuolar
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for SHC201 is exc
5' end seq. ID SHC201F
5' end seq. 
>SHC201F.Seq
AAAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCTTTTATAAAA
ATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAGAAAATA
ATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAACACCA
ATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCCATAT
TCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACCAAAT
TATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGAACCA
TTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAATACT
GTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAATTTG
AAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATATTTA
AGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTGNN
NNNNNNNN
Length of 5' end seq. 608
3' end seq. ID SHC201Z
3' end seq. 
>SHC201Z.Seq
NNNNNNNNNNCAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTATATA
AAACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAGCA
ATAATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCATCAGAA
ACTGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTTGATGAT
AGTGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCATTCC
GGTTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACTCAACATCATTT
CAATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAAACGTTAGTCAAANA
GATGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTNTACAATTGGT
AGTGTTGGTGGTGCTCTTGCTATCGGTGCTCTTGCCTATTACTTTAAAATACCNTTTCGT
GTGAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATCACAAAT
CACATATGTGTAAAATTAAAACTTAACTAAAAATAAAATAAATAAATAAATAAATAAAT
Length of 3' end seq. 659
Connected seq. ID SHC201P
Connected seq. 
>SHC201P.Seq
AAAAAAATTAAATTTTCCTAAAATAATTAAATTTCTCTTTTTTAATTTTCTTTTATAAAA
ATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCATTGATAAAAATGGAAAAGAAAATA
ATATTACTGATTTTATTTTTGTTCTTTATATCAGGATATTCAATGAATCCTCCAACACCA
ATAGATGCAATATATGATGATAAATCATTTACATTAATTTTTAATAGTAATCTCCCATAT
TCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAACCCAGAACTGAAATGGCACCAAAT
TATTTCAATTGTTCTCTAGTTGATGGAGAGAGACATTGTTTATTCCATTCAGATGAACCA
TTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTATGTGTTAGAGATAAATCAAATACT
GTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTATATTATCCAAAAGTATACAATTTG
AAATATAGTAAAAAACCAAAAACATCTGGTGAAGATATAGTCATTACTGGCTCATATTTA
AGATTATTTGGTGGTCCTAATTTCCTTATTAATTCCATTGATGTAAATAAACCTTTTG--
--------CAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTATATAAA
ACCAATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAGCAAT
AATTCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCATCAGAAAC
TGTTCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTTGATGATAG
TGATTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCATTCCGG
TTCAAGTGTGAAAAATACATCAGGAGTATTATATNTCCTATTTAACTCAACATCATTTCA
ATATAATGTCACAATTGAAGAAATTAAATTATNTCCATCACCAAACGTTAGTCAAANAGA
TGTTGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTNTACAATTGGTAG
TGTTGGTGGTGCTCTTGCTATCGGTGCTCTTGCCTATTACTTTAAAATACCNTTTCGTGT
GAAAAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATCACAAATCA
CATATGTGTAAAATTAAAACTTAACTAAAAATAAAATAAATAAATAAATAAATAAAT
Length of connected seq. 1247
Full length Seq ID -
Full length Seq. -
Length of full length seq. -