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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHC195
Library SH
(Link to library)
Clone ID SHC195
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16361-1
Original site URL
Representative seq. ID SHC195P
(Link to Original site)
Representative DNA sequence 
>SHC195 (SHC195Q) /CSM/SH/SHC1-D/SHC195Q.Seq.d/
ACAACAGCAACAACAACAAAAGCAAAAAGATAAAGAGTTGTCATCACAAAAGAAGAAACC
ATCATCAATGCAATTAAGTAAAAAGAAACATGTCGCCAAAGAAGATTCTGAAACATTAGA
GACAATCATTGGTGAAGAGAAGAAGGAGGTTGTATTTGAAGTTAAACCATACTTTTCTCA
TGCAATTCTTCAAGCAACCATGGCGGTATTTTTAATTTGGAATATTTTTTACTTTGCATA
TCGTGCCGGTTGGACAATGAATAGAACCGATTATATCACATTCTCTTATTCAATCCTTTT
CATCATTGTAGAGTTTATCTCATTTTTGGGTTCAGCATTGCATTTGAATAACTTTACCAA
TCCATGTACTTTTGTTTTGGTGGTAACATTGGAACAAATCCTTGCCAAGAGAAGAAAGAA
GCATCCAACCGTTATGATGTACGTTTGTACTTACAAAGAACCACCATCCATTGTATCACG
TACTTTTAGAACTGCAATCTCTATGGATTATCCAAGTGAAAACCTTTGGATTGGTTTATT
GGATGATTCTGTAAATTATCGTGAATCAAGAGGTTGGGCACATCTTCAATCGGTTGAAAA
GAATTTCCTTTATGTACTCTTACXXXXXXXXXXCTCCATTAATTATGAGTATTTGGACTG
TACCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGG
TGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTA
AGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCT
TTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAAC
TTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATT
TCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATG
ATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACA
AAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTG
TTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGT
GGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCA
TTCCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTC
ACAATATTGTTTTATTCTGGTACTTGGTTTCTTGGTATTACTCTTTGTNATGTCAAAGTT
TGATTCCTAGA
sequence update 2002.10.25
Translated Amino Acid sequence 
QQQQQQKQKDKELSSQKKKPSSMQLSKKKHVAKEDSETLETIIGEEKKEVVFEVKPYFSH
AILQATMAVFLIWNIFYFAYRAGWTMNRTDYITFSYSILFIIVEFISFLGSALHLNNFTN
PCTFVLVVTLEQILAKRRKKHPTVMMYVCTYKEPPSIVSRTFRTAISMDYPSENLWIGLL
DDSVNYRESRGWAHLQSVEKNFLYVLL---

---PLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWVE
ATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCE
VFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSA
VLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLFWYL
VSWYYSLXCQSLIPR
Translated Amino Acid sequence (All Frames) 
Frame A:
ttatttkakr*rvvitkeetiinaik*ketcrqrrf*nirdnhw*reeggci*s*tilfs
cnsssnhggifnleyfllciscrldne*nrlyhillfnpfhhcrvylifgfsiafe*lyq
smyfcfggnigtnpcqekkeasnrydvrlylqrttihcityf*ncnlyglsk*kpldwfi
g*fckls*ikrlgtssig*kefplctl---

---lh*l*vfglyqsl*kiqsfsfssv*fl*wcyqesfni*fleprdlmkpvrvvhhfg*
kllifgelnklslvllvlifhhgekvplqslnflklerlvvis*pcgigreis*rnq*fv
kfsvklnwsmkmimlknqvvnirlnnlsvlqtknliplkiqdfsfqilssllliswl**v
lyldlivskmicgfwls*lvslslpygiyglsfqwlfvkvknnghmllhtmltilfysgt
wflgitlcxvkv*fl

Frame B:
QQQQQQKQKDKELSSQKKKPSSMQLSKKKHVAKEDSETLETIIGEEKKEVVFEVKPYFSH
AILQATMAVFLIWNIFYFAYRAGWTMNRTDYITFSYSILFIIVEFISFLGSALHLNNFTN
PCTFVLVVTLEQILAKRRKKHPTVMMYVCTYKEPPSIVSRTFRTAISMDYPSENLWIGLL
DDSVNYRESRGWAHLQSVEKNFLYVLL---

---sinyeyldctnrckrsnhfhsrrydscngvtkshsiyds*sqetl*sr*ewsitlgr
sy*sles*tnflwfcwylyfimerrfrfnr*ts*s*kd*ss*vshveleerfrketssl*
sfpsn*igq*k**csrikw*t*g*tifpyfkqri*yh*kfktfpskyyplcc*ylgydec
ct*i*lfpk*yvafgcrswflflylmafmvfhsngsssk*ktmaicffipcsqycfilvl
gflvllfvmskfds*

Frame C:
nsnnnkskkikschhkrrnhhqcn*vkrnmspkkilkh*rqslvkrrrrlylklnhtflm
qffkqpwryf*fgifftlhivpvgq*iepiishsliqsfssl*slshfwvqhci*itlpi
hvllfww*hwnkslpreersiqpl*ctfvltknhhplyhvllelqslwiiqvktfglvyw
mil*iivnqevghifnrlkrisfmysy---

---PLIMSIWTVPIVVKDPIIFILVGMIPVMVLPRVIQYMILRAKRPYEAGKSGPSLWVE
ATDLWRAEQTFFGFAGTYISSWREGSASIVKLLKARKISRHKLAMWNWKRDFVKKPVVCE
VFRQTKLVNENDNAQESSGKHKAEQSFRTSNKESDTIKNSRLFLPNIILFVVNILAMMSA
VLRFNCFQNDMWLLVVVAGFSFSTLWHLWSFIPMALRQSEKQWPYASSYHAHNIVLFWYL
VSWYYSLXCQSLIPR
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHC195 (SHC195Q) /CSM/SH/SHC1-D/SHC195Q.Seq.d/                       2692   0.0
SHK418 (SHK418Q) /CSM/SH/SHK4-A/SHK418Q.Seq.d/                       1483   0.0
SHA836 (SHA836Q) /CSM/SH/SHA8-B/SHA836Q.Seq.d/                       1481   0.0
CHG541 (CHG541Q) /CSM/CH/CHG5-B/CHG541Q.Seq.d/                       1469   0.0
AHQ442 (AHQ442Q) /CSM/AH/AHQ4-B/AHQ442Q.Seq.d/                       1469   0.0
SHD704 (SHD704Q) /CSM/SH/SHD7-A/SHD704Q.Seq.d/                       1467   0.0
CHR547 (CHR547Q) /CSM/CH/CHR5-B/CHR547Q.Seq.d/                       1465   0.0
AHL711 (AHL711Q) /CSM/AH/AHL7-A/AHL711Q.Seq.d/                       1459   0.0
AHQ843 (AHQ843Q) /CSM/AH/AHQ8-B/AHQ843Q.Seq.d/                       1455   0.0
SHC269 (SHC269Q) /CSM/SH/SHC2-C/SHC269Q.Seq.d/                       1453   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF163835|AF163835.1 Dictyostelium discoideum cellulose synthase (dcsA) mRNA, complete cds.  1398   0.0    2
AC147620|AC147620.5 Mus musculus BAC clone RP24-285H21 from chromosome 13, complete sequence.    56   0.002  1
AC122295|AC122295.4 Mus musculus chromosome 13 clone RP23-263E3, complete sequence.    56   0.002  1
AC110221|AC110221.6 Mus musculus chromosome 3, clone RP24-567P14, complete sequence.    54   0.008  1
AC123308|AC123308.4 Rattus norvegicus clone CH230-316H1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    52   0.032  1
AC106972|AC106972.4 Rattus norvegicus clone CH230-151L20, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.    52   0.032  1
AC096954|AC096954.7 Rattus norvegicus clone CH230-4P7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    52   0.032  1
AC122826|AC122826.4 Mus musculus BAC clone RP23-209L3 from chromosome 18, complete sequence.    40   0.074  2
AC168045|AC168045.1 Mus musculus chromosome 7 clone RP23-68O19 map 7, WORKING DRAFT SEQUENCE, 10 unordered pieces.    50   0.13   1
AC136924|AC136924.4 Mus musculus chromosome 17 clone RP23-219G8 map 17, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    50   0.13   1
dna update 2005.12.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U720) RecName: Full=Cellulose synthase catalytic subunit A [U...   478   e-133
CP001037_1366(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    55   7e-06
CP000494_3389(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl...    52   5e-05
CP000137_363(CP000137|pid:none) Rhizobium etli CFN 42 plasmid p4...    50   2e-04
CP001029_1254(CP001029|pid:none) Methylobacterium populi BJ001, ...    50   2e-04
CP001075_288(CP001075|pid:none) Rhizobium etli CIAT 652 plasmid ...    49   4e-04
CP000320_131(CP000320|pid:none) Nitrobacter hamburgensis X14 pla...    48   7e-04
CP000951_2081(CP000951|pid:none) Synechococcus sp. PCC 7002, com...    47   0.002
CP001001_369(CP001001|pid:none) Methylobacterium radiotolerans J...    46   0.003
CP001186_1574(CP001186|pid:none) Bacillus cereus G9842, complete...    46   0.003
protein update 2009. 4.15
PSORT 

 psg: 0.39  gvh: 0.28  alm: 0.23  top: 0.57  tms: 0.40  mit: 0.17  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 56.0 %: plasma membrane
	 16.0 %: vacuolar
	 12.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: endoplasmic reticulum

>> prediction for SHC195 is pla
5' end seq. ID SHC195F
5' end seq. 
>SHC195F.Seq
ACAACAGCAACAACAACAAAAGCAAAAAGATAAAGAGTTGTCATCACAAAAGAAGAAACC
ATCATCAATGCAATTAAGTAAAAAGAAACATGTCGCCAAAGAAGATTCTGAAACATTAGA
GACAATCATTGGTGAAGAGAAGAAGGAGGTTGTATTTGAAGTTAAACCATACTTTTCTCA
TGCAATTCTTCAAGCAACCATGGCGGTATTTTTAATTTGGAATATTTTTTACTTTGCATA
TCGTGCCGGTTGGACAATGAATAGAACCGATTATATCACATTCTCTTATTCAATCCTTTT
CATCATTGTAGAGTTTATCTCATTTTTGGGTTCAGCATTGCATTTGAATAACTTTACCAA
TCCATGTACTTTTGTTTTGGTGGTAACATTGGAACAAATCCTTGCCAAGAGAAGAAAGAA
GCATCCAACCGTTATGATGTACGTTTGTACTTACAAAGAACCACCATCCATTGTATCACG
TACTTTTAGAACTGCAATCTCTATGGATTATCCAAGTGAAAACCTTTGGATTGGTTTATT
GGATGATTCTGTAAATTATCGTGAATCAAGAGGTTGGGCACATCTTCAATCGGTTGAAAA
GAATTTCCTTTATGTACTCTTACNNNNNNNNNN
Length of 5' end seq. 633
3' end seq. ID SHC195Z
3' end seq. 
>SHC195Z.Seq
NNNNNNNNNNCTCCATTAATTATGAGTATTTGGACTGTACCAATCGTTGTAAAAGATCCA
ATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGGTGTTACCAAGAGTCATTCAATAT
ATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTAAGAGTGGTCCATCACTTTGGGTA
GAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCTTTGGTTTTGCTGGTACTTATATT
TCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAACTTCTTAAAGCTAGAAAGATTAGT
CGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATTTCGTAAAGAAACCAGTAGTTTGT
GAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATGATAATGCTCAAGAATCAAGTGGT
AAACATAAGGCTGAACAATCTTTCCGTACTTCAAACAAAGAATCTGATACCATTAAAAAT
TCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTGTTAATATCTTGGCTATGATGAGT
GCTGTACTTAGATTTAATTGTTTCCAAAATGATATGTGGCTTTTGGTTGTCGTAGCTGGT
TTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCATTCCAATGGCTCTTCGTCAAAGT
GAAAAACAATGGCCATATGCTTCTTCATACCATGCTCACAATATTGTTTTATTCTGGTAC
TTGGTTTCTTGGTATTACTCTTTGTNATGTCAAAGTTTGATTCCTAGA
Length of 3' end seq. 768
Connected seq. ID SHC195P
Connected seq. 
>SHC195P.Seq
ACAACAGCAACAACAACAAAAGCAAAAAGATAAAGAGTTGTCATCACAAAAGAAGAAACC
ATCATCAATGCAATTAAGTAAAAAGAAACATGTCGCCAAAGAAGATTCTGAAACATTAGA
GACAATCATTGGTGAAGAGAAGAAGGAGGTTGTATTTGAAGTTAAACCATACTTTTCTCA
TGCAATTCTTCAAGCAACCATGGCGGTATTTTTAATTTGGAATATTTTTTACTTTGCATA
TCGTGCCGGTTGGACAATGAATAGAACCGATTATATCACATTCTCTTATTCAATCCTTTT
CATCATTGTAGAGTTTATCTCATTTTTGGGTTCAGCATTGCATTTGAATAACTTTACCAA
TCCATGTACTTTTGTTTTGGTGGTAACATTGGAACAAATCCTTGCCAAGAGAAGAAAGAA
GCATCCAACCGTTATGATGTACGTTTGTACTTACAAAGAACCACCATCCATTGTATCACG
TACTTTTAGAACTGCAATCTCTATGGATTATCCAAGTGAAAACCTTTGGATTGGTTTATT
GGATGATTCTGTAAATTATCGTGAATCAAGAGGTTGGGCACATCTTCAATCGGTTGAAAA
GAATTTCCTTTATGTACTCTTAC----------CTCCATTAATTATGAGTATTTGGACTG
TACCAATCGTTGTAAAAGATCCAATCATTTTCATTCTCGTCGGTATGATTCCTGTAATGG
TGTTACCAAGAGTCATTCAATATATGATTCTTAGAGCCAAGAGACCTTATGAAGCCGGTA
AGAGTGGTCCATCACTTTGGGTAGAAGCTACTGATCTTTGGAGAGCTGAACAAACTTTCT
TTGGTTTTGCTGGTACTTATATTTCATCATGGAGAGAAGGTTCCGCTTCAATCGTTAAAC
TTCTTAAAGCTAGAAAGATTAGTCGTCATAAGTTAGCCATGTGGAATTGGAAGAGAGATT
TCGTAAAGAAACCAGTAGTTTGTGAAGTTTTCCGTCAAACTAAATTGGTCAATGAAAATG
ATAATGCTCAAGAATCAAGTGGTAAACATAAGGCTGAACAATCTTTCCGTACTTCAAACA
AAGAATCTGATACCATTAAAAATTCAAGACTTTTCCTTCCAAATATTATCCTCTTTGTTG
TTAATATCTTGGCTATGATGAGTGCTGTACTTAGATTTAATTGTTTCCAAAATGATATGT
GGCTTTTGGTTGTCGTAGCTGGTTTCTCTTTCTCTACCTTATGGCATTTATGGTCTTTCA
TTCCAATGGCTCTTCGTCAAAGTGAAAAACAATGGCCATATGCTTCTTCATACCATGCTC
ACAATATTGTTTTATTCTGGTACTTGGTTTCTTGGTATTACTCTTTGTNATGTCAAAGTT
TGATTCCTAGA
Length of connected seq. 1381
Full length Seq ID -
Full length Seq. -
Length of full length seq. -