SHC182 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SHC182
Library	SH (Link to library)
Clone ID	SHC182 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16411-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SH/SHC1-D/SHC182Q.Seq.d/
Representative seq. ID	SHC182P (Link to Original site)
Representative DNA sequence	>SHC182 (SHC182Q) /CSM/SH/SHC1-D/SHC182Q.Seq.d/ AATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTGTAA ACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATATAT TTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAACAA ATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAGCAC CAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATATTTG AAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCAAAC AACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAGATTCATTATTTTTACAAGTTT TAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACCATT TAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTGCAA CCAAAGAACAAGTTATACAAGCAGTTAAAGAGATTAGAGGAAATAAAAAGATTACAAGTA AAACTGCAGAATCTACCTATGAAGCATTATCAAAATATGGTTXXXXXXXXXXGAAGACCA TACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTC TTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCA AATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATCCTTGGTGAACAAGCA AACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAA GTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGATATAATTGTCTTTACT CCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAG AGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTTAGATTCAATTATC AATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTACATTGAAAAGAAT ATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTT GTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTAAAACAACAACAA CAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAATAAAAAAAAATAAAAAAT AAATAAAATCTATNCTGTTTTTTTAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	iiikiciykrnknflffvnilfsvnksynfstyiyiyiflkNKIKMSFNPEEFTDKTN TILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAKQ PVQNPVPPEISPDSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGAT KEQVIQAVKEIRGNKKITSKTAESTYEALSKYG--- ---RPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYI LGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQL RSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKLK ENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIKkkiknknlxcffk
Translated Amino Acid sequence (All Frames)	Frame A: nk*lkfayikeikifyfltyyflinhiifqhtyiyiyfnkikkchliqknllikq iqfcelknwqeknqmynhqyiwllhymmkiiqnlylkklvemyqklmlvlkdypn nlfkiqyhlkflqihyfykfdqqhvikrimviliqltiywdywmieiyyqywemlvq pknklykqlkrleeikrlqvklqnlpmkhyqnmv--- ---edhtvyclmklkklinkfgmfsykywmkvvlpmvkvepisqmllslpqivvnt slvnkqtkkvvttlyhklvkikslmklenisvqsfivsmilsllhvkktfivlllfn dpskrdkikiclrfqtmliqlsmlhmiqslvvdhnvtlkrilslnlvnsslvvn kkikvllsmkkiiistlilinnnnnvqllqpknkkllnkkkkinkiyxvflk Frame B: innnnlhikkkffifckhiifckiiffnihiyiyifkiknknvisrriynk ynfvknsrigkrkikctistntfgcyiikrfskiyikswwrctkncwfkiisqt tcskssttnfsrfiiftsfkisstsskewfsfsspfnigiig*ryiisigrcwcn qrtsytssrdrkkdykncriylsiikiw--- ---ktiqcsiv*skssstslecsltsigrssyrwsrnrrflkccyhydlkfrsih pwtskqrrwqlfitslrshsktfpsrvfkssrynclysierkpsyyyssi kirrkeirrskyvfkdfkrcfrfnyqccisnlwwtietlhkeychtthpwwik rksrcccqkrsssqlyyrfktttttssfsnqktknyikknkkiksxlff* Frame C: iiikiciykrnknflffvnilfsvnksynfstyiyiyiflkNKIKMSFNPEEFTDKTN TILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAKQ PVQNPVPPEISPDSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGAT KEQVIQAVKEIRGNKKITSKTAESTYEALSKYG--- ---RPYSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYI LGEQANKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQL RSVEKRLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKLK ENQGVVVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIKkkiknknlxcffk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHK241 (VHK241Q) /CSM/VH/VHK2-B/VHK241Q.Seq.d/ 1247 0.0 VHI333 (VHI333Q) /CSM/VH/VHI3-B/VHI333Q.Seq.d/ 1247 0.0 SLA449 (SLA449Q) /CSM/SL/SLA4-C/SLA449Q.Seq.d/ 1247 0.0 SHL887 (SHL887Q) /CSM/SH/SHL8-D/SHL887Q.Seq.d/ 1247 0.0 SHL827 (SHL827Q) /CSM/SH/SHL8-B/SHL827Q.Seq.d/ 1247 0.0 SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/ 1247 0.0 SHL678 (SHL678Q) /CSM/SH/SHL6-D/SHL678Q.Seq.d/ 1247 0.0 SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/ 1247 0.0 SHL591 (SHL591Q) /CSM/SH/SHL5-D/SHL591Q.Seq.d/ 1247 0.0 SHL540 (SHL540Q) /CSM/SH/SHL5-B/SHL540Q.Seq.d/ 1247 0.0
own update	2002.10.15
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N BQ862449\|BQ862449.1 QGC21B24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA cloneQGC21B24, mRNA sequence. 80 1e-12 2 BH165696\|BH165696.1 ENTTP28TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1 BH164508\|BH164508.1 ENTTD23TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1 BH163900\|BH163900.1 ENTSJ80TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1 BH163033\|BH163033.1 ENTRP52TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1 BH161826\|BH161826.1 ENTRN55TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1 BH159060\|BH159060.1 ENTTR44TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1 BH158420\|BH158420.1 ENTRY44TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1 BH156349\|BH156349.1 ENTRL93TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1 BH149144\|BH149144.1 ENTQQ09TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 5e-07 1
dna update	2005.12.31
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AJ970534_1(AJ970534\|pid:none) Triticum turgidum subsp. durum par... 207 5e-52 AJ970533_1(AJ970533\|pid:none) Triticum turgidum subsp. durum par... 207 9e-52 (Q6F2Y7) RecName: Full=Heat shock protein 101; &AC130611_3(AC13... 207 9e-52 AF097363_1(AF097363\|pid:none) Triticum aestivum heat shock prote... 206 1e-51 AJ970535_1(AJ970535\|pid:none) Triticum turgidum subsp. durum par... 206 2e-51 AY764155_1(AY764155\|pid:none) Vitis vinifera heat shock protein ... 205 3e-51 AF083327_1(AF083327\|pid:none) Zea mays 101 kDa heat shock protei... 205 3e-51 BT066296_1(BT066296\|pid:none) Zea mays full-length cDNA clone ZM... 205 3e-51 AF174433_1(AF174433\|pid:none) Triticum aestivum heat shock prote... 205 3e-51 L35272_1(L35272\|pid:none) Glycine max heat shock protein (SB100)... 203 1e-50
protein update	2009. 4.15
PSORT	psg: 0.63 gvh: 0.36 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: cytoplasmic 40.0 %: nuclear 8.0 %: cytoskeletal 8.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for SHC182 is cyt
5' end seq. ID	SHC182F
5' end seq.	>SHC182F.Seq AATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTGTAA ACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATATAT TTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAACAA ATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAGCAC CAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATATTTG AAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCAAAC AACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAGATTCATTATTTTTACAAGTTT TAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACCATT TAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTGCAA CCAAAGAACAAGTTATACAAGCAGTTAAAGAGATTAGAGGAAATAAAAAGATTACAAGTA AAACTGCAGAATCTACCTATGAAGCATTATCAAAATATGGTTNNNNNNNNNN
Length of 5' end seq.	652
3' end seq. ID	SHC182Z
3' end seq.	>SHC182Z.Seq NNNNNNNNNNGAAGACCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAA CAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGT AGAACCGTAGATTTCTCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATAC ATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAA GATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGAT GATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAA TTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGAT GCTTTAGATTCAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAA CGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTA AAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATA GATTTAAAACAACAACAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAA TAAAAAAAAATAAAAAATAAATAAAATCTATNCTGTTTTTTTAAAA
Length of 3' end seq.	706
Connected seq. ID	SHC182P
Connected seq.	>SHC182P.Seq AATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTGTAA ACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATATAT TTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAACAA ATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAGCAC CAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATATTTG AAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCAAAC AACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAGATTCATTATTTTTACAAGTTT TAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACCATT TAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTGCAA CCAAAGAACAAGTTATACAAGCAGTTAAAGAGATTAGAGGAAATAAAAAGATTACAAGTA AAACTGCAGAATCTACCTATGAAGCATTATCAAAATATGGTT----------GAAGACCA TACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTC TTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCA AATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATCCTTGGTGAACAAGCA AACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAA GTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGATATAATTGTCTTTACT CCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAG AGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTTAGATTCAATTATC AATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTACATTGAAAAGAAT ATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTT GTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTAAAACAACAACAA CAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAATAAAAAAAAATAAAAAAT AAATAAAATCTATNCTGTTTTTTTAAAA
Length of connected seq.	1338
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas