SHC156 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SHC156
Library	SH (Link to library)
Clone ID	SHC156 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11332-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SH/SHC1-C/SHC156Q.Seq.d/
Representative seq. ID	SHC156P (Link to Original site)
Representative DNA sequence	>SHC156 (SHC156Q) /CSM/SH/SHC1-C/SHC156Q.Seq.d/ CTCTTAATCGATGTTAATGAAGTTGAAGTTTTAGAATGGAAATTAGATACAAATCAAATT CATGACTTGGTTGTTTATCATGATTCAATCTATGCATTACATGGTCAAAATCATTCTATC TCTAGAATTTTCACTTCAATTCCTTTAGAAATTTTACCAACTCCTCAAGAATTACAAGAA CAATCTGATCAATTACAAAAACAACAACAACAACAACAACAACAACAACAACAACCTGAG GAAATAATAAGTGAACCACAATCACAACCACAACCAATAGCAATAGCCTCATTAATTGAG GAAAAGAAAGATGAACAATTACAACCAAAGAAATCTGAATCACAAGAGAATTTAACAACT TTATCAAATAGTGATAATATAATTGGTAGTGAAATTGATAGTACAAATACTGATAATTCT ACATTATCAAGTAGTACAAATTCATTAACTATTGAAGGTAGTGCAAGTTTGCCATTAGTT AGTGAATCATCAAACCAACAACAACAACAACAACAACAACAACAACCCTTCATCATTAAA ATCATCAACTGATCAATTCGTTGATGATAAATTATTGGATAGTACAACXXXXXXXXXXAT TTTCACTGATGATAAAAAAGGTTTTTCAAATTGTTTTGAAAAATAGTACATCAATTGAAA TTTGGTCAAATACTTTAGAAATTATGAAACAATTAAGAATTGATCAACATGAAAATGAAG ATCAATCTGGTGAATCAAGTATTACATTTGAAATTTCAGAATTATTTATATTGGATTTAA TTGGTAAAGCAATTGGTCCATTGGAAACTATTGAATTGGTTTGCAAATTTTCAGAAATGT TTGAAAAGAGTAAAATTGAAACTAAATTATTATCAGATTGGATTAAATTTGGAAAATGGT CGTTGTATGATAGACCAAAGTTATCATATGATATCTTGTCACTTTTGGATAGTCATTTAT GGTTAAAGAAACCCTTGACCATTTCACCTCAATTCTTAACTATGATTGGTCCTGAATTGG ACCCAACTTTACCAAATAATCCATTCAAAGAATTCTTTAATAAACTTGGAACTTCAAGTC ATGATAGTGGTGATAATATCGATTTTAAAATACCTTCATTCTTTGAAGATAATTCACGTA GACATTGGGGTGTAGAAACTGAATTATCAACTGGTTCTTGTCCAATTTGTACCTTATCTT TAGCTGAAAATCCTGAATCTTCATTTTTAGGTTCAACACCCGCTACAATTATAGTATTCC CAAATTGTGGTCATTCATATCATCATTGTTGTAT
sequence update	2002.10.25
Translated Amino Acid sequence	ssmlmklkfngniqikfmtwlfimiqsmhymvkiilslefslqflkfyqllknykn nlinyknnnnnnnnnnnnlrk*vnhnhnhnqqphlrkrkmnnynqrnlnhkriql yqiviilvvklivqiliilhyqvvqihllkvvqvchLVNHQTNNNNNNNNNNPSSLK SSTDQFVDDKLLDST--- ---FSLMIKKVFQIVLKNSTSIEIWSNTLEIMKQLRIDQHENEDQSGESSITFEISELFI LDLIGKAIGPLETIELVCKFSEMFEKSKIETKLLSDWIKFGKWSLYDRPKLSYDILSLLD SHLWLKKPLTISPQFLTMIGPELDPTLPNNPFKEFFNKLGTSSHDSGDNIDFKIPSFFED NSRRHWGVETELSTGSCPICTLSLAENPESSFLGSTPATIIVFPNCGHSYHHCC
Translated Amino Acid sequence (All Frames)	Frame A: llidvnevevlewkldtnqihdlvvyhdsiyalhgqnhsisriftsipleilptpqelqe qsdqlqkqqqqqqqqqqqpeeiisepqsqpqpiaiaslieekkdeqlqpkksesqenltt lsnsdniigseidstntdnstlssstnsltiegsaslplvsessnqqqqqqqqqqpfiik iinsir*iigyn--- ---iftddkkgfsncfekyinnlvkyfrnyetiknstkrsiwikyyinfriiy igfnwsnwsignyiglqifrnvkenniiirldiwkmvvv*tkviiylvtfg sfmvketldhftsilnydwsigpnftksiqriltwnfkswyrfntfilr fttlgcrniinwflsnlylifsksififrfntrynysipklwsfisslly Frame B: ssmlmklkfngniqikfmtwlfimiqsmhymvkiilslefslqflkfyqllknykn nlinyknnnnnnnnnnnnlrk*vnhnhnhnqqphlrkrkmnnynqrnlnhkriql yqiviilvvklivqiliilhyqvvqihllkvvqvchLVNHQTNNNNNNNNNNPSSLK SSTDQFVDDKLLDST--- ---FSLMIKKVFQIVLKNSTSIEIWSNTLEIMKQLRIDQHENEDQSGESSITFEISELFI LDLIGKAIGPLETIELVCKFSEMFEKSKIETKLLSDWIKFGKWSLYDRPKLSYDILSLLD SHLWLKKPLTISPQFLTMIGPELDPTLPNNPFKEFFNKLGTSSHDSGDNIDFKIPSFFED NSRRHWGVETELSTGSCPICTLSLAENPESSFLGSTPATIIVFPNCGHSYHHCC Frame C: lnrc*ssfrmeiryksnslgclsfnlcitwsksfylnfhfnsfrnftnssritrt isitkttttttttttttgnnkttittttnsnslingkertittkeiitrefnnf ikynwnykyfyiikykfinyrckfaisiikpttttttttttlhhn hqlinslminywivq--- ---fh**krffklfkivhqlkfgqilklnnelinmkmkinlvnqvlhlkfqnyly wilvkqlvhwkllnwfanfqkclkrvklklnyyqiglnlengrcmidqsyhmischfwi viygrnppfhlnsllvlnwtqlyqiihsknslinlelqvmivviisilkylhslki ihvdigvklnyqlvlvqfvpyllkilnlhfvqhplqlysqivvihiiivv
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SHC156 (SHC156Q) /CSM/SH/SHC1-C/SHC156Q.Seq.d/ 1463 0.0 CHS203 (CHS203Q) /CSM/CH/CHS2-A/CHS203Q.Seq.d/ 1356 0.0 CHQ609 (CHQ609Q) /CSM/CH/CHQ6-A/CHQ609Q.Seq.d/ 1356 0.0 AHF529 (AHF529Q) /CSM/AH/AHF5-B/AHF529Q.Seq.d/ 1348 0.0 CHS417 (CHS417Q) /CSM/CH/CHS4-A/CHS417Q.Seq.d/ 1340 0.0 AHI664 (AHI664Q) /CSM/AH/AHI6-C/AHI664Q.Seq.d/ 1330 0.0 SHK834 (SHK834Q) /CSM/SH/SHK8-B/SHK834Q.Seq.d/ 1324 0.0 CHN655 (CHN655Q) /CSM/CH/CHN6-C/CHN655Q.Seq.d/ 1308 0.0 CHG701 (CHG701Q) /CSM/CH/CHG7-A/CHG701Q.Seq.d/ 1287 0.0 VFE776 (VFE776Q) /CSM/VF/VFE7-D/VFE776Q.Seq.d/ 1174 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 1291 0.0 2 AY160101\|AY160101.1 Dictyostelium discoideum nucleotide exchange factor RasGEF L (gefL) gene, complete cds. 46 0.033 3 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 0.066 16 AQ186890\|AQ186890.1 HS_3113_B2_C07_T7 CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=3113 Col=14 Row=F, genomic survey sequence. 44 0.33 2 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 32 0.46 10 DT747137\|DT747137.1 EST1180986 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1W653, mRNA sequence. 48 0.46 1 DT747136\|DT747136.1 EST1180985 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1W653, mRNA sequence. 48 0.46 1 DT731465\|DT731465.1 EST1165315 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1T789, mRNA sequence. 48 0.46 1 DR924529\|DR924529.1 EST1116068 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1N260, mRNA sequence. 48 0.46 1 DR924528\|DR924528.1 EST1116067 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1N260, mRNA sequence. 48 0.46 1
dna update	2005.12.31
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP000589_44(CP000589\|pid:none) Ostreococcus lucimarinus CCE9901 ... 41 0.10 BT052911_1(BT052911\|pid:none) Medicago truncatula clone MTYFL_FM... 40 0.17 AY057581_1(AY057581\|pid:none) Arabidopsis thaliana putative 2,3-... 40 0.17 AY045627_1(AY045627\|pid:none) Arabidopsis thaliana At1g09780/F21... 40 0.17 AY426251_1(AY426251\|pid:none) Tetrahymena thermophila strain B p... 40 0.23 U55854_11(U55854\|pid:none) Caenorhabditis elegans cosmid C04G6, ... 39 0.29 U55854_12(U55854\|pid:none) Caenorhabditis elegans cosmid C04G6, ... 39 0.29 T29599(T29599)hypothetical protein C04G6.1 - Caenorhabditis eleg... 39 0.29 CP000589_371(CP000589\|pid:none) Ostreococcus lucimarinus CCE9901... 39 0.50 AJ833642_1(AJ833642\|pid:none) Coffea canephora partial mRNA for ... 38 0.66
protein update	2009. 4.15
PSORT	psg: 0.60 gvh: 0.45 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.36 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: nuclear 24.0 %: mitochondrial 24.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: vacuolar 4.0 %: vesicles of secretory system >> prediction for SHC156 is nuc
5' end seq. ID	SHC156F
5' end seq.	>SHC156F.Seq CTCTTAATCGATGTTAATGAAGTTGAAGTTTTAGAATGGAAATTAGATACAAATCAAATT CATGACTTGGTTGTTTATCATGATTCAATCTATGCATTACATGGTCAAAATCATTCTATC TCTAGAATTTTCACTTCAATTCCTTTAGAAATTTTACCAACTCCTCAAGAATTACAAGAA CAATCTGATCAATTACAAAAACAACAACAACAACAACAACAACAACAACAACAACCTGAG GAAATAATAAGTGAACCACAATCACAACCACAACCAATAGCAATAGCCTCATTAATTGAG GAAAAGAAAGATGAACAATTACAACCAAAGAAATCTGAATCACAAGAGAATTTAACAACT TTATCAAATAGTGATAATATAATTGGTAGTGAAATTGATAGTACAAATACTGATAATTCT ACATTATCAAGTAGTACAAATTCATTAACTATTGAAGGTAGTGCAAGTTTGCCATTAGTT AGTGAATCATCAAACCAACAACAACAACAACAACAACAACAACAACCCTTCATCATTAAA ATCATCAACTGATCAATTCGTTGATGATAAATTATTGGATAGTACAACNNNNNNNNNN
Length of 5' end seq.	598
3' end seq. ID	SHC156Z
3' end seq.	>SHC156Z.Seq NNNNNNNNNNATTTTCACTGATGATAAAAAAGGTTTTTCAAATTGTTTTGAAAAATAGTA CATCAATTGAAATTTGGTCAAATACTTTAGAAATTATGAAACAATTAAGAATTGATCAAC ATGAAAATGAAGATCAATCTGGTGAATCAAGTATTACATTTGAAATTTCAGAATTATTTA TATTGGATTTAATTGGTAAAGCAATTGGTCCATTGGAAACTATTGAATTGGTTTGCAAAT TTTCAGAAATGTTTGAAAAGAGTAAAATTGAAACTAAATTATTATCAGATTGGATTAAAT TTGGAAAATGGTCGTTGTATGATAGACCAAAGTTATCATATGATATCTTGTCACTTTTGG ATAGTCATTTATGGTTAAAGAAACCCTTGACCATTTCACCTCAATTCTTAACTATGATTG GTCCTGAATTGGACCCAACTTTACCAAATAATCCATTCAAAGAATTCTTTAATAAACTTG GAACTTCAAGTCATGATAGTGGTGATAATATCGATTTTAAAATACCTTCATTCTTTGAAG ATAATTCACGTAGACATTGGGGTGTAGAAACTGAATTATCAACTGGTTCTTGTCCAATTT GTACCTTATCTTTAGCTGAAAATCCTGAATCTTCATTTTTAGGTTCAACACCCGCTACAA TTATAGTATTCCCAAATTGTGGTCATTCATATCATCATTGTTGTAT
Length of 3' end seq.	706
Connected seq. ID	SHC156P
Connected seq.	>SHC156P.Seq CTCTTAATCGATGTTAATGAAGTTGAAGTTTTAGAATGGAAATTAGATACAAATCAAATT CATGACTTGGTTGTTTATCATGATTCAATCTATGCATTACATGGTCAAAATCATTCTATC TCTAGAATTTTCACTTCAATTCCTTTAGAAATTTTACCAACTCCTCAAGAATTACAAGAA CAATCTGATCAATTACAAAAACAACAACAACAACAACAACAACAACAACAACAACCTGAG GAAATAATAAGTGAACCACAATCACAACCACAACCAATAGCAATAGCCTCATTAATTGAG GAAAAGAAAGATGAACAATTACAACCAAAGAAATCTGAATCACAAGAGAATTTAACAACT TTATCAAATAGTGATAATATAATTGGTAGTGAAATTGATAGTACAAATACTGATAATTCT ACATTATCAAGTAGTACAAATTCATTAACTATTGAAGGTAGTGCAAGTTTGCCATTAGTT AGTGAATCATCAAACCAACAACAACAACAACAACAACAACAACAACCCTTCATCATTAAA ATCATCAACTGATCAATTCGTTGATGATAAATTATTGGATAGTACAAC----------AT TTTCACTGATGATAAAAAAGGTTTTTCAAATTGTTTTGAAAAATAGTACATCAATTGAAA TTTGGTCAAATACTTTAGAAATTATGAAACAATTAAGAATTGATCAACATGAAAATGAAG ATCAATCTGGTGAATCAAGTATTACATTTGAAATTTCAGAATTATTTATATTGGATTTAA TTGGTAAAGCAATTGGTCCATTGGAAACTATTGAATTGGTTTGCAAATTTTCAGAAATGT TTGAAAAGAGTAAAATTGAAACTAAATTATTATCAGATTGGATTAAATTTGGAAAATGGT CGTTGTATGATAGACCAAAGTTATCATATGATATCTTGTCACTTTTGGATAGTCATTTAT GGTTAAAGAAACCCTTGACCATTTCACCTCAATTCTTAACTATGATTGGTCCTGAATTGG ACCCAACTTTACCAAATAATCCATTCAAAGAATTCTTTAATAAACTTGGAACTTCAAGTC ATGATAGTGGTGATAATATCGATTTTAAAATACCTTCATTCTTTGAAGATAATTCACGTA GACATTGGGGTGTAGAAACTGAATTATCAACTGGTTCTTGTCCAATTTGTACCTTATCTT TAGCTGAAAATCCTGAATCTTCATTTTTAGGTTCAACACCCGCTACAATTATAGTATTCC CAAATTGTGGTCATTCATATCATCATTGTTGTAT
Length of connected seq.	1284
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas