SHC137
Library SH
(Link to library)
Clone ID SHC137
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SHC137P
(Link to Original site)
Representative DNA sequence
>SHC137 (SHC137Q) /CSM/SH/SHC1-B/SHC137Q.Seq.d/
GTTCACAATATCATCACCTTGAGGATAATGATTACCCAGTGAACAAAGATTCACTTTATA
CTCTTAACTCTTTTTATAATCAAAACATTGTTAAACAGTTACATCAACAAAGCCAGCAAC
ATGATGTTCATAAAAACATCAACAAACTTAAAGAATACGTCAAAGACTCATATGGTATAA
AACTAGTTCCTGATACAACCGTTCCAATTCCAAAAGCTGTTGAATCAGAGATGAAGTATA
AACCACAGAAGATTGAATTTAATACTCCAACAGAGTTAACAAATGTTCAAGATAAAAACT
ATACTGTAAACATATTCAATCGTCCAAAGATATTGAATTCTAGTAAAGAATTAATTAACG
ATGAAGAAGATGAATTGCTTTACACAATTAAATTCGATAAAGAAACAAACAAACCAATCA
TCTCATTATTACATAGTACTGGTACAAGTGATACTGCTCTCATTCCGACTCTCAAATGTT
TAATCGTTCCAAACAGAGAAAACATGGATAAACCCAAGATTATAATTAACTCTCATTCCA
AAGAAAAACAATTCAAATTAATTCTCGATACTGGAAGTAATGTTAGTTTAATXXXXXXXX
XXATTCAATCCACCAACTCCCGTTAATCATTTCAATTCATTAACAAAGACTCGTATACCA
ATGAGCAACATCAAAAAGATTGTCCGTGATAATATACTAGATGCTCAAATCAATGCTCAA
AAGTATTACAACCGAGGTCGTGGTGATGTTATCTTCGTAGTCGGAGAAAAGGTGATGGTT
AAAAGAAAATTCTTCCAAACTAATCTTTCAAAAGATCTAATCTCTCACAAACTTGAATCC
AAGAATTGTGGACCATTCATAATCACTGCCGTTCATGGTAATAATGTAACACTCGATTTA
GTAGGTTATCCAAAGAAACACAATGTGTTCAACAAGGATCAAATCGTAAAACTATACGAG
GACAGTGAGTGGTTAAGAGAAGAGATATCGATGCCCGAACCTGAGGAGATGGACGAAGCA
AGTTACGAAGTTGAAAGTATTCTCAATCACGATAAAGTCAAAAAGATGTACCTAGTGAAG
TTCAAAGGTTACCCAGAACCTGAATGGATCAAAGAAGTCGATACAGACTGTGAAGAGTTA
GTCAGAGAGTATTGGAATAACGTGCAGAAGAAACAATTGAACTCAAGAAGAGAAAGAGAG
AATGTAACTACAGAAGCCGTTGAGCCAATTGTGTCACCTCCACTCTCCCAAGAAGTTCAA
AGTTCTCAAACATTGCAACCAATTACTCCAAGACAACAAAACTCCTNCTCAAATCAAAGA
AACCA
sequence update 2002.10.25
Translated Amino Acid sequence
SQYHHLEDNDYPVNKDSLYTLNSFYNQNIVKQLHQQSQQHDVHKNINKLKEYVKDSYGIK
LVPDTTVPIPKAVESEMKYKPQKIEFNTPTELTNVQDKNYTVNIFNRPKILNSSKELIND
EEDELLYTIKFDKETNKPIISLLHSTGTSDTALIPTLKCLIVPNRENMDKPKIIINSHSK
EKQFKLILDTGSNVSL---

---FNPPTPVNHFNSLTKTRIPMSNIKKIVRDNILDAQINAQKYYNRGRGDVIFVVGEKV
MVKRKFFQTNLSKDLISHKLESKNCGPFIITAVHGNNVTLDLVGYPKKHNVFNKDQIVKL
YEDSEWLREEISMPEPEEMDEASYEVESILNHDKVKKMYLVKFKGYPEPEWIKEVDTDCE
ELVREYWNNVQKKQLNSRRERENVTTEAVEPIVSPPLSQEVQSSQTLQPITPRQQNSXSN
QRN


Translated Amino Acid sequence (All Frames)
Frame A:
vhniitlrimitq*tkihfilltlfiiktllnsyinkasnmmfiktstnlkntskthmv*
n*fliqpfqfqkllnqr*sinhrrlnlilqqs*qmfkiktil*tysivqry*ilvkn*lt
mkkmncftqlnsikkqtnqsshyyivlvqvillsfrlsnv*sfqtektwinprl*ltlip
kknnsn*fsilevmlv*---

---iqstnsr*sfqfinkdsytneqhqkdcp**ytrcsnqcskvlqprsw*cylrsrrkg
dg*kkilpn*sfkrsnlsqt*iqelwtihnhcrsw**cntrfsrlsketqcvqqgsnrkt
irgq*vvkrrdidart*gdgrsklrs*kysqsr*sqkdvpsevqrlprt*mdqrsryrl*
rvsqrvle*raeetielkkrkrecnyrsr*ancvtstlprsskfsniatnyskttklllk
skkp

Frame B:
ftissp*g**lpseqrftlys*lfl*skhc*tvtstkpat*cs*khqqt*rirqrliwyk
tss*ynrsnsksc*irdev*tted*i*ysnrvnkcsr*klyckhiqsskdief**rin*r
*rr*ialhn*ir*rnkqtnhliit*ywyk*ycshsdsqmfnrskqrkhg*tqdyn*lsfq
rktiqinsrywk*c*fn---

---FNPPTPVNHFNSLTKTRIPMSNIKKIVRDNILDAQINAQKYYNRGRGDVIFVVGEKV
MVKRKFFQTNLSKDLISHKLESKNCGPFIITAVHGNNVTLDLVGYPKKHNVFNKDQIVKL
YEDSEWLREEISMPEPEEMDEASYEVESILNHDKVKKMYLVKFKGYPEPEWIKEVDTDCE
ELVREYWNNVQKKQLNSRRERENVTTEAVEPIVSPPLSQEVQSSQTLQPITPRQQNSXSN
QRN

Frame C:
SQYHHLEDNDYPVNKDSLYTLNSFYNQNIVKQLHQQSQQHDVHKNINKLKEYVKDSYGIK
LVPDTTVPIPKAVESEMKYKPQKIEFNTPTELTNVQDKNYTVNIFNRPKILNSSKELIND
EEDELLYTIKFDKETNKPIISLLHSTGTSDTALIPTLKCLIVPNRENMDKPKIIINSHSK
EKQFKLILDTGSNVSL---

---sihqlpliisih*qrlvyq*atskrlsviiy*mlksmlksittevvvmlss*sekr*
wlkenssklifqki*sltnlnprivdhs*slpfmvim*hsi**viqrntmcstriks*ny
trtvsg*ekryrcpnlrrwtkqvtklkvfsitikskrct**sskvtqnlngskksiqtvk
s*sesigitcrrnn*tqeekerm*lqkplsqlchlhspkkfkvlkhcnqllqdnktpxqi
ket

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHC137 (SHC137Q) /CSM/SH/SHC1-B/SHC137Q.Seq.d/ 2561 0.0
AHN739 (AHN739Q) /CSM/AH/AHN7-B/AHN739Q.Seq.d/ 1427 0.0
AHM541 (AHM541Q) /CSM/AH/AHM5-B/AHM541Q.Seq.d/ 1427 0.0
AHH584 (AHH584Q) /CSM/AH/AHH5-D/AHH584Q.Seq.d/ 1427 0.0
AHH480 (AHH480Q) /CSM/AH/AHH4-D/AHH480Q.Seq.d/ 1427 0.0
AHF244 (AHF244Q) /CSM/AH/AHF2-B/AHF244Q.Seq.d/ 1427 0.0
AHC690 (AHC690Q) /CSM/AH/AHC6-D/AHC690Q.Seq.d/ 1427 0.0
AHB822 (AHB822Q) /CSM/AH/AHB8-A/AHB822Q.Seq.d/ 1427 0.0
VHI225 (VHI225Q) /CSM/VH/VHI2-B/VHI225Q.Seq.d/ 1425 0.0
AHA263 (AHA263Q) /CSM/AH/AHA2-C/AHA263Q.Seq.d/ 1423 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF049230|AF049230.1 Dictyostelium discoideum LTR-retrotransposon Skipper, Gag (gag) gene, complete cds; and Pro (pro) and Pol (pol) genes, partial cds. 1380 0.0 1
AF017040|AF017040.1 Dictyostelium discoideum LTR-retrotransposon Skipper, Gag (gag) mRNA, complete cds; and Pro (pro) and Pol (pol) mRNA, partial cds. 1376 0.0 1
U63602|U63602.1 Dictyostelium discoideum Tdd-4 transposable element flanking sequence, clone p432 right end. 246 1e-60 1
AF049229|AF049229.1 Dictyostelium discoideum LTR-retrotransposon Skipper, 3' LTR sequence. 70 1e-07 1
AW092927|AW092927.1 EST286107 tomato mixed elicitor, BTI Lycopersicon esculentum cDNA clone cLET23A6, mRNA sequence. 50 0.12 1
CW576859|CW576859.1 OA_ABa0105J16.f OA_ABa Oryza australiensis genomic clone OA_ABa0105J16 5', genomic survey sequence. 50 0.12 1
AC080074|AC080074.3 Homo sapiens chromosome 7 clone RP11-338F10, WORKING DRAFT SEQUENCE, 28 unordered pieces. 48 0.47 1
CE126813|CE126813.1 tigr-gss-dog-17000325982241 Dog Library Canis familiaris genomic, genomic survey sequence. 48 0.47 1
AC073048|AC073048.7 Homo sapiens BAC clone RP11-54E21 from 7, complete sequence. 48 0.47 1
DV167517|DV167517.1 ZM_BFb0165K16.f ZM_BFb Zea mays cDNA 3', mRNA sequence. 46 1.9 1
dna update 2005.12.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF049230_3(AF049230|pid:none) Dictyostelium discoideum LTR-retro... 482 e-134
AF017040_2(AF017040|pid:none) Dictyostelium discoideum LTR-retro... 395 e-108
AP007151_1375(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 64 2e-08
AF051915_2(AF051915|pid:none) Cladosporium fulvum CfT-1 LTR-retr... 54 9e-06
AJ439555_2(AJ439555|pid:none) Saccharomyces exiguus LTR-retrotra... 53 3e-05
S23571(S23571;S19851) hypothetical protein - fungus (Cladosporiu... 52 5e-05
AC007203_3(AC007203|pid:none) Arabidopsis thaliana chromosome I ... 50 2e-04
AB028236_3(AB028236|pid:none) Tricholoma matsutake LTR retroelem... 49 4e-04
DQ443361_1(DQ443361|pid:none) Bombyx mori chromobox-like protein... 48 9e-04
AY849688_1(AY849688|pid:none) Magnaporthe grisea retrotransposab... 47 0.001
protein update 2009. 4.15
PSORT

psg: 0.75 gvh: 0.33 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
32.0 %: nuclear
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for SHC137 is cyt

5' end seq. ID SHC137F
5' end seq.
>SHC137F.Seq
GTTCACAATATCATCACCTTGAGGATAATGATTACCCAGTGAACAAAGATTCACTTTATA
CTCTTAACTCTTTTTATAATCAAAACATTGTTAAACAGTTACATCAACAAAGCCAGCAAC
ATGATGTTCATAAAAACATCAACAAACTTAAAGAATACGTCAAAGACTCATATGGTATAA
AACTAGTTCCTGATACAACCGTTCCAATTCCAAAAGCTGTTGAATCAGAGATGAAGTATA
AACCACAGAAGATTGAATTTAATACTCCAACAGAGTTAACAAATGTTCAAGATAAAAACT
ATACTGTAAACATATTCAATCGTCCAAAGATATTGAATTCTAGTAAAGAATTAATTAACG
ATGAAGAAGATGAATTGCTTTACACAATTAAATTCGATAAAGAAACAAACAAACCAATCA
TCTCATTATTACATAGTACTGGTACAAGTGATACTGCTCTCATTCCGACTCTCAAATGTT
TAATCGTTCCAAACAGAGAAAACATGGATAAACCCAAGATTATAATTAACTCTCATTCCA
AAGAAAAACAATTCAAATTAATTCTCGATACTGGAAGTAATGTTAGTTTAATNNNNNNNN
NN
Length of 5' end seq. 602
3' end seq. ID SHC137Z
3' end seq.
>SHC137Z.Seq
NNNNNNNNNNATTCAATCCACCAACTCCCGTTAATCATTTCAATTCATTAACAAAGACTC
GTATACCAATGAGCAACATCAAAAAGATTGTCCGTGATAATATACTAGATGCTCAAATCA
ATGCTCAAAAGTATTACAACCGAGGTCGTGGTGATGTTATCTTCGTAGTCGGAGAAAAGG
TGATGGTTAAAAGAAAATTCTTCCAAACTAATCTTTCAAAAGATCTAATCTCTCACAAAC
TTGAATCCAAGAATTGTGGACCATTCATAATCACTGCCGTTCATGGTAATAATGTAACAC
TCGATTTAGTAGGTTATCCAAAGAAACACAATGTGTTCAACAAGGATCAAATCGTAAAAC
TATACGAGGACAGTGAGTGGTTAAGAGAAGAGATATCGATGCCCGAACCTGAGGAGATGG
ACGAAGCAAGTTACGAAGTTGAAAGTATTCTCAATCACGATAAAGTCAAAAAGATGTACC
TAGTGAAGTTCAAAGGTTACCCAGAACCTGAATGGATCAAAGAAGTCGATACAGACTGTG
AAGAGTTAGTCAGAGAGTATTGGAATAACGTGCAGAAGAAACAATTGAACTCAAGAAGAG
AAAGAGAGAATGTAACTACAGAAGCCGTTGAGCCAATTGTGTCACCTCCACTCTCCCAAG
AAGTTCAAAGTTCTCAAACATTGCAACCAATTACTCCAAGACAACAAAACTCCTNCTCAA
ATCAAAGAAACCA
Length of 3' end seq. 733
Connected seq. ID SHC137P
Connected seq.
>SHC137P.Seq
GTTCACAATATCATCACCTTGAGGATAATGATTACCCAGTGAACAAAGATTCACTTTATA
CTCTTAACTCTTTTTATAATCAAAACATTGTTAAACAGTTACATCAACAAAGCCAGCAAC
ATGATGTTCATAAAAACATCAACAAACTTAAAGAATACGTCAAAGACTCATATGGTATAA
AACTAGTTCCTGATACAACCGTTCCAATTCCAAAAGCTGTTGAATCAGAGATGAAGTATA
AACCACAGAAGATTGAATTTAATACTCCAACAGAGTTAACAAATGTTCAAGATAAAAACT
ATACTGTAAACATATTCAATCGTCCAAAGATATTGAATTCTAGTAAAGAATTAATTAACG
ATGAAGAAGATGAATTGCTTTACACAATTAAATTCGATAAAGAAACAAACAAACCAATCA
TCTCATTATTACATAGTACTGGTACAAGTGATACTGCTCTCATTCCGACTCTCAAATGTT
TAATCGTTCCAAACAGAGAAAACATGGATAAACCCAAGATTATAATTAACTCTCATTCCA
AAGAAAAACAATTCAAATTAATTCTCGATACTGGAAGTAATGTTAGTTTAAT--------
--ATTCAATCCACCAACTCCCGTTAATCATTTCAATTCATTAACAAAGACTCGTATACCA
ATGAGCAACATCAAAAAGATTGTCCGTGATAATATACTAGATGCTCAAATCAATGCTCAA
AAGTATTACAACCGAGGTCGTGGTGATGTTATCTTCGTAGTCGGAGAAAAGGTGATGGTT
AAAAGAAAATTCTTCCAAACTAATCTTTCAAAAGATCTAATCTCTCACAAACTTGAATCC
AAGAATTGTGGACCATTCATAATCACTGCCGTTCATGGTAATAATGTAACACTCGATTTA
GTAGGTTATCCAAAGAAACACAATGTGTTCAACAAGGATCAAATCGTAAAACTATACGAG
GACAGTGAGTGGTTAAGAGAAGAGATATCGATGCCCGAACCTGAGGAGATGGACGAAGCA
AGTTACGAAGTTGAAAGTATTCTCAATCACGATAAAGTCAAAAAGATGTACCTAGTGAAG
TTCAAAGGTTACCCAGAACCTGAATGGATCAAAGAAGTCGATACAGACTGTGAAGAGTTA
GTCAGAGAGTATTGGAATAACGTGCAGAAGAAACAATTGAACTCAAGAAGAGAAAGAGAG
AATGTAACTACAGAAGCCGTTGAGCCAATTGTGTCACCTCCACTCTCCCAAGAAGTTCAA
AGTTCTCAAACATTGCAACCAATTACTCCAAGACAACAAAACTCCTNCTCAAATCAAAGA
AACCA
Length of connected seq. 1315
Full length Seq ID -
Full length Seq. -
Length of full length seq. -