SHC127
Library SH
(Link to library)
Clone ID SHC127
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12656-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHC127 (SHC127Q) /CSM/SH/SHC1-B/SHC127Q.Seq.d/
XXXXXXXXXXGANGACTTTTTNGTTATTCACATAATCAATGAACATGATNTNTGTTTGGA
AACCAATAAAAAAACTGTATTAATTACCCTNTTATCAAATTTATATTCAAAACATTTAAA
TGGTAAANAATTGGTTTTTGAATTCAAANATTCAATTCAATATTGTAATCAAAAAGGTCC
TTCANAATTGAAATTTGTAAAGGTTGATTCAATTCATGAAAAATNTTCAAATTCACCTCA
AGCTAACTCTCCTTCTTTTATAACTGCTACCTCAGTG
sequence update 2002. 9.10
Translated Amino Acid sequence
---DFXVIHIINEHDXCLETNKKTVLITLLSNLYSKHLNGKXLVFEFKXSIQYCNQKGPS
XLKFVKVDSIHEKXSNSPQANSPSFITATSV


Translated Amino Acid sequence (All Frames)
Frame A:
---xtfxlft*smnmxxvwkpikkly*lpxyqiyiqni*mvxnwflnsxiqfnivikkvl
xn*nl*rliqfmknxqihlkltllll*llpq


Frame B:
---xlfxyshnq*t*xxfgnq*kncinypxikfifktfkw*xigf*iqxfnsil*skrsf
xieickg*fns*kxfkftss*lsffyncyls


Frame C:
---DFXVIHIINEHDXCLETNKKTVLITLLSNLYSKHLNGKXLVFEFKXSIQYCNQKGPS
XLKFVKVDSIHEKXSNSPQANSPSFITATSV


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHC127 (SHC127Q) /CSM/SH/SHC1-B/SHC127Q.Seq.d/ 434 e-121
VHP545 (VHP545Q) /CSM/VH/VHP5-B/VHP545Q.Seq.d/ 394 e-109
VHB637 (VHB637Q) /CSM/VH/VHB6-B/VHB637Q.Seq.d/ 394 e-109
SHG101 (SHG101Q) /CSM/SH/SHG1-A/SHG101Q.Seq.d/ 394 e-109
AHC712 (AHC712Q) /CSM/AH/AHC7-A/AHC712Q.Seq.d/ 394 e-109
VSB851 (VSB851Q) /CSM/VS/VSB8-C/VSB851Q.Seq.d/ 392 e-108
AHH186 (AHH186Q) /CSM/AH/AHH1-D/AHH186Q.Seq.d/ 392 e-108
VHB647 (VHB647Q) /CSM/VH/VHB6-B/VHB647Q.Seq.d/ 389 e-107
AHC675 (AHC675Q) /CSM/AH/AHC6-D/AHC675Q.Seq.d/ 387 e-107
AHQ361 (AHQ361Q) /CSM/AH/AHQ3-C/AHQ361Q.Seq.d/ 383 e-105

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

S73909|S73909.1 abmA=actin-based motor [Dictyostelium, Genomic, 3402 nt]. 331 e-107 2
CL226172|CL226172.1 ZMMBBc0575L15r ZMMBBc Zea mays subsp. mays genomic clone ZMMBBc0575L15 3', genomic survey sequence. 46 0.37 1
CG394624|CG394624.1 ZMMBBc0008P11f ZMMBBc (EcoRI) Zea mays subsp. mays genomic clone ZMMBBc0008P11 5', genomic survey sequence. 46 0.37 1
CR855996|CR855996.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-219B24. 42 0.93 2
BX842696|BX842696.13 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 38 1.1 2
AC148458|AC148458.1 Xenopus tropicalis clone CH216-24D6, WORKING DRAFT SEQUENCE, 18 unordered pieces. 44 1.5 1
CW861901|CW861901.1 sh2b6-10.g_042.ab1 Whole-genome shotgun library of the elephant shark (aka elephant fish) Callorhinchus milii genomic, genomic survey sequence. 44 1.5 1
BV653361|BV653361.1 S215P61564FA9.T0 Clara Pan troglodytes troglodytes STS genomic, sequence tagged site. 30 3.7 2
AI537938|AI537938.1 tp27a06.x1 NCI_CGAP_Gas4 Homo sapiens cDNA clone IMAGE:2188978 3' similar to contains Alu repetitive element;, mRNA sequence. 42 5.7 1
AC172375|AC172375.1 Pan troglodytes chromosome UNKNOWN clone CH251-541M22, WORKING DRAFT SEQUENCE, 21 unordered pieces. 42 5.7 1
dna update 2005.12.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P22467) RecName: Full=Myosin IA heavy chain; AltName: Full=Myos... 150 1e-35
AF248488_1(AF248488|pid:none) Strongylocentrotus purpuratus amoe... 35 0.80
A33284(A33284) myosin heavy chain IB - slime mold (Dictyostelium... 34 1.8
(P42522) RecName: Full=Myosin IC heavy chain; 32 6.7
L35323_1(L35323|pid:none) Dictyostelium discoideum myosin IC (my... 32 6.7

protein update 2009. 1.15
PSORT

psg: 0.75 gvh: 0.56 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.10 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: cytoskeletal
12.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar

>> prediction for SHC127 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHC127Z
3' end seq.
>SHC127Z.Seq
NNNNNNNNNNGANGACTTTTTNGTTATTCACATAATCAATGAACATGATNTNTGTTTGGA
AACCAATAAAAAAACTGTATTAATTACCCTNTTATCAAATTTATATTCAAAACATTTAAA
TGGTAAANAATTGGTTTTTGAATTCAAANATTCAATTCAATATTGTAATCAAAAAGGTCC
TTCANAATTGAAATTTGTAAAGGTTGATTCAATTCATGAAAAATNTTCAAATTCACCTCA
AGCTAACTCTCCTTCTTTTATAACTGCTACCTCAGTG
Length of 3' end seq. 277
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -