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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHC124
Library SH
(Link to library)
Clone ID SHC124
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12043-1
Original site URL
Representative seq. ID SHC124P
(Link to Original site)
Representative DNA sequence 
>SHC124 (SHC124Q) /CSM/SH/SHC1-A/SHC124Q.Seq.d/
GAAACCATTCGTTTAAAGAAATGAAATATTTATATATATTAAAAATTTTATTATTATTAA
TCAATTATATAAAATGTACAACACTACCAAATATTTATAATGTAATTGGACCATTCCCAA
TTGGAGAAAGAGAAGAAATTTATGATACATTAGAATCATATGGTGGAATTTTTAATATTC
CAATTGGTGATAATACAACCTATCCATCAGAATTAGGACATAATAGTGTAGTTGGTTGGA
GTACATATAATTGGAGTACACCAGGAGCATTTCAAATGGAATGGTCATCAAGTATTAATT
GGTCTTTTTATGATATGCCATTTGGTTGGGAAATTTATTTATGGTATGCTTATGTAATTG
GTGATTTTACAGCAACTGAACCATCATCAAATTATATTATCAATTGTACTGATATTCGTA
CATTCTACATTCAATCTCAATCAAATCCAACCCAAATATATGAATTTTCCGGTGACTTTT
TCGGATATGGTAATGGTCAACAAATCATTTATTTAAATCAAGGTGAACAATATAGAATTT
ATTTAAAGATGTTAAGTAGTACAAGAGTTTATGGTTCAGCATTTTCACAATTCACTTGTA
ATCTAATACCAATTAAAGAAACCCTTTCAATCATTGAAACTGAATCATTXXXXXXXXXXT
CAAACCATTGCTCAAGCAAAACAAGCAGCAATCTATGTAAACAATTTTTGGAATAATTAT
GGTAGAGGTTCTGTAACCATTTTCTTTGATCAACAATACATTGAGCAATTATCAAATCAA
GATACNTCATGTAGTGAAAATGTAATTTTAATTGGTAATTCAAATGAAAATTTAATAACT
AATAAATATATCATTAGATCAGATGTTTNTTTTAATCAAGATAATTCTTTCTATATTGGA
GGTGAAAATGGTTATTTATTCCAAGGTGATGGTATTGGTATTGCTTTCCTTATGCCAAAT
ANATGTGGTGGTAATTTAGTTTTAGTAATTGCTGGTACTGATTCACTTGGTTTAGATAAT
GCACTTCATTCAATTCCACAAANAAGTGGTGATATTACTGGCCCTGATTTCATTGTAACA
GGTCCTGATTTCCGTGGTAAAGGTTATGGTGGTATTATCTCTGCTGGTTATTGGGATAAT
TATTATAAATTATCTGATTCAAATTTTTATATTTNTGAAATTACAAATTAAAAAAAATTA
TNTAAATTATCCAAATTAAAAAAAAGTAATATTGTAAAATCCTATCAAATTTTCTCAAAA
TTGTAATTGCAAAATAATAAAATAATTAATCNCAATAATTCTTTTCAAAAAATAAAAAAA
AAATAAAAATAAATTAA
sequence update 2002.10.25
Translated Amino Acid sequence 
NHSFKEMKYLYILKILLLLINYIKCTTLPNIYNVIGPFPIGEREEIYDTLESYGGIFNIP
IGDNTTYPSELGHNSVVGWSTYNWSTPGAFQMEWSSSINWSFYDMPFGWEIYLWYAYVIG
DFTATEPSSNYIINCTDIRTFYIQSQSNPTQIYEFSGDFFGYGNGQQIIYLNQGEQYRIY
LKMLSSTRVYGSAFSQFTCNLIPIKETLSIIETES---

---QTIAQAKQAAIYVNNFWNNYGRGSVTIFFDQQYIEQLSNQDTSCSENVILIGNSNEN
LITNKYIIRSDVXFNQDNSFYIGGENGYLFQGDGIGIAFLMPNXCGGNLVLVIAGTDSLG
LDNALHSIPQXSGDITGPDFIVTGPDFRGKGYGGIISAGYWDNYYKLSDSNFYIXEITN*
kklxklsklkksnivksyqifskl*lqnnkiinxnnsfqkikkk*k*i
Translated Amino Acid sequence (All Frames) 
Frame A:
etirlkk*niyiy*kfyyy*sii*nvqhyqifim*ldhsqlekekkfmih*nhmveflif
qlviiqpihqn*diiv*lvgvhiigvhqehfkwnghqvliglfmichlvgkfiygmlm*l
vilqqlnhhqiilsivlifvhstfnlnqiqpkymnfpvtfsdmvmvnksfi*ikvnnief
i*rc*vvqefmvqhfhnslvi*yqlkkpfqslklnh---

---snhcssktssnlckqfle*lw*rfcnhfl*stih*aiiksryxm**kcnfnw*fk*k
fnn**iyh*ircxf*sr*fflywr*kwlfipr*wywycfpyakxmww*fsfsncwy*ftw
fr*ctsfnstxkw*yywp*fhcnrs*fpw*rlwwyylcwllg*ll*ii*fkflyx*nykl
kkix*iiqikkk*yckilsnflkiviak**nn*sq*ffsknkkkikin*

Frame B:
kpfv*rneifiyiknfiiinqlykmynttkyl*cnwtipnwrkrrnl*yiriiwwnf*ys
nw**ynlsirirt**cswleyi*leytrsisngmviky*lvfl*yaiwlgnlfmvclcnw
*fysn*tiiklyyqly*ysyilhsisiksnpni*ifr*lfriw*wstnhlfksr*ti*nl
fkdvk*ykslwfsiftihl*sntn*rnpfnh*n*ii---

---QTIAQAKQAAIYVNNFWNNYGRGSVTIFFDQQYIEQLSNQDTSCSENVILIGNSNEN
LITNKYIIRSDVXFNQDNSFYIGGENGYLFQGDGIGIAFLMPNXCGGNLVLVIAGTDSLG
LDNALHSIPQXSGDITGPDFIVTGPDFRGKGYGGIISAGYWDNYYKLSDSNFYIXEITN*
kklxklsklkksnivksyqifskl*lqnnkiinxnnsfqkikkk*k*i

Frame C:
NHSFKEMKYLYILKILLLLINYIKCTTLPNIYNVIGPFPIGEREEIYDTLESYGGIFNIP
IGDNTTYPSELGHNSVVGWSTYNWSTPGAFQMEWSSSINWSFYDMPFGWEIYLWYAYVIG
DFTATEPSSNYIINCTDIRTFYIQSQSNPTQIYEFSGDFFGYGNGQQIIYLNQGEQYRIY
LKMLSSTRVYGSAFSQFTCNLIPIKETLSIIETES---

---kpllkqnkqqsm*tifgiimvevl*pfslinntlsnyqikixhvvkm*f*lviqmki
**linisldqmfxlikiilsilevkmviyskvmvlvllslcqixvvvi*f**llvlihlv
*imhfiqfhkxvvillalisl*qvlisvvkvmvvlsllvigiiiinyliqififxklqik
knyxnypn*kkvil*npikfsqncnckiik*lixiilfkk*kknknkl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHC124 (SHC124Q) /CSM/SH/SHC1-A/SHC124Q.Seq.d/                       2109   0.0
VHB554 (VHB554Q) /CSM/VH/VHB5-C/VHB554Q.Seq.d/                       1138   0.0
VHA631 (VHA631Q) /CSM/VH/VHA6-B/VHA631Q.Seq.d/                       1138   0.0
VHN208 (VHN208Q) /CSM/VH/VHN2-A/VHN208Q.Seq.d/                       1130   0.0
VHG829 (VHG829Q) /CSM/VH/VHG8-B/VHG829Q.Seq.d/                       1086   0.0
VHJ531 (VHJ531Q) /CSM/VH/VHJ5-B/VHJ531Q.Seq.d/                        942   0.0
VHG337 (VHG337Q) /CSM/VH/VHG3-B/VHG337Q.Seq.d/                        916   0.0
AHI334 (AHI334Q) /CSM/AH/AHI3-B/AHI334Q.Seq.d/                         74   6e-12
SHC323 (SHC323Q) /CSM/SH/SHC3-A/SHC323Q.Seq.d/                         62   2e-08
VHP538 (VHP538Q) /CSM/VH/VHP5-B/VHP538Q.Seq.d/                         42   0.022
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CE202092|CE202092.1 tigr-gss-dog-17000372460003 Dog Library Canis familiaris genomic,genomic survey sequence.    40   0.025  2
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    40   0.12   13
AC174028|AC174028.1 Bos taurus clone CH240-93A12, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces.    42   0.12   3
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    38   0.17   7
AC170030|AC170030.2 Mustela furo clone CH237-461E18, WORKING DRAFT SEQUENCE, 7 ordered pieces.    48   0.48   1
AC145539|AC145539.2 Didelphis virginiana clone LB3-256N22, WORKING DRAFT SEQUENCE, 4 ordered pieces.    48   0.48   1
AC017061|AC017061.5 Homo sapiens chromosome 8 clone RP11-353D5, WORKING DRAFT SEQUENCE, 8 unordered pieces.    38   0.65   6
AG152359|AG152359.1 Pan troglodytes DNA, clone: RP43-015L24.T7.    38   0.66   2
CW863182|CW863182.1 she2h48-74.g_048.ab1 Whole-genome shotgun library of the elephant shark (aka elephant fish) Callorhinchus milii genomic, genomic survey sequence.    40   0.98   3
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    30   0.99   13
dna update 2005.12.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017341_214(AE017341|pid:none) Cryptococcus neoformans var. neo...    52   6e-05
CP000912_190(CP000912|pid:none) Brucella suis ATCC 23445 chromos...    40   0.24
AE017341_213(AE017341|pid:none) Cryptococcus neoformans var. neo...    38   0.90
(Q8YB57) RecName: Full=Isoleucyl-tRNA synthetase;          EC=6....    38   0.90
(P0C123) RecName: Full=Isoleucyl-tRNA synthetase;          EC=6....    38   0.90
(Q8FX81) RecName: Full=Isoleucyl-tRNA synthetase;          EC=6....    38   0.90
CP000360_94(CP000360|pid:none) Acidobacteria bacterium Ellin345,...    37   2.0
CP000767_667(CP000767|pid:none) Campylobacter curvus 525.92, com...    35   4.4
EU088373_1(EU088373|pid:none) Helianthus annuus cycloidea-like 3...    35   5.8
CP000446_2116(CP000446|pid:none) Shewanella sp. MR-4, complete g...    35   5.8
protein update 2009. 4.15
PSORT 

 psg: 0.80  gvh: 0.59  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SHC124 is nuc
5' end seq. ID SHC124F
5' end seq. 
>SHC124F.Seq
GAAACCATTCGTTTAAAGAAATGAAATATTTATATATATTAAAAATTTTATTATTATTAA
TCAATTATATAAAATGTACAACACTACCAAATATTTATAATGTAATTGGACCATTCCCAA
TTGGAGAAAGAGAAGAAATTTATGATACATTAGAATCATATGGTGGAATTTTTAATATTC
CAATTGGTGATAATACAACCTATCCATCAGAATTAGGACATAATAGTGTAGTTGGTTGGA
GTACATATAATTGGAGTACACCAGGAGCATTTCAAATGGAATGGTCATCAAGTATTAATT
GGTCTTTTTATGATATGCCATTTGGTTGGGAAATTTATTTATGGTATGCTTATGTAATTG
GTGATTTTACAGCAACTGAACCATCATCAAATTATATTATCAATTGTACTGATATTCGTA
CATTCTACATTCAATCTCAATCAAATCCAACCCAAATATATGAATTTTCCGGTGACTTTT
TCGGATATGGTAATGGTCAACAAATCATTTATTTAAATCAAGGTGAACAATATAGAATTT
ATTTAAAGATGTTAAGTAGTACAAGAGTTTATGGTTCAGCATTTTCACAATTCACTTGTA
ATCTAATACCAATTAAAGAAACCCTTTCAATCATTGAAACTGAATCATTNNNNNNNNNN
Length of 5' end seq. 659
3' end seq. ID SHC124Z
3' end seq. 
>SHC124Z.Seq
NNNNNNNNNNTCAAACCATTGCTCAAGCAAAACAAGCAGCAATCTATGTAAACAATTTTT
GGAATAATTATGGTAGAGGTTCTGTAACCATTTTCTTTGATCAACAATACATTGAGCAAT
TATCAAATCAAGATACNTCATGTAGTGAAAATGTAATTTTAATTGGTAATTCAAATGAAA
ATTTAATAACTAATAAATATATCATTAGATCAGATGTTTNTTTTAATCAAGATAATTCTT
TCTATATTGGAGGTGAAAATGGTTATTTATTCCAAGGTGATGGTATTGGTATTGCTTTCC
TTATGCCAAATANATGTGGTGGTAATTTAGTTTTAGTAATTGCTGGTACTGATTCACTTG
GTTTAGATAATGCACTTCATTCAATTCCACAAANAAGTGGTGATATTACTGGCCCTGATT
TCATTGTAACAGGTCCTGATTTCCGTGGTAAAGGTTATGGTGGTATTATCTCTGCTGGTT
ATTGGGATAATTATTATAAATTATCTGATTCAAATTTTTATATTTNTGAAATTACAAATT
AAAAAAAATTATNTAAATTATCCAAATTAAAAAAAAGTAATATTGTAAAATCCTATCAAA
TTTTCTCAAAATTGTAATTGCAAAATAATAAAATAATTAATCNCAATAATTCTTTTCAAA
AAATAAAAAAAAAATAAAAATAAATTAA
Length of 3' end seq. 688
Connected seq. ID SHC124P
Connected seq. 
>SHC124P.Seq
GAAACCATTCGTTTAAAGAAATGAAATATTTATATATATTAAAAATTTTATTATTATTAA
TCAATTATATAAAATGTACAACACTACCAAATATTTATAATGTAATTGGACCATTCCCAA
TTGGAGAAAGAGAAGAAATTTATGATACATTAGAATCATATGGTGGAATTTTTAATATTC
CAATTGGTGATAATACAACCTATCCATCAGAATTAGGACATAATAGTGTAGTTGGTTGGA
GTACATATAATTGGAGTACACCAGGAGCATTTCAAATGGAATGGTCATCAAGTATTAATT
GGTCTTTTTATGATATGCCATTTGGTTGGGAAATTTATTTATGGTATGCTTATGTAATTG
GTGATTTTACAGCAACTGAACCATCATCAAATTATATTATCAATTGTACTGATATTCGTA
CATTCTACATTCAATCTCAATCAAATCCAACCCAAATATATGAATTTTCCGGTGACTTTT
TCGGATATGGTAATGGTCAACAAATCATTTATTTAAATCAAGGTGAACAATATAGAATTT
ATTTAAAGATGTTAAGTAGTACAAGAGTTTATGGTTCAGCATTTTCACAATTCACTTGTA
ATCTAATACCAATTAAAGAAACCCTTTCAATCATTGAAACTGAATCATT----------T
CAAACCATTGCTCAAGCAAAACAAGCAGCAATCTATGTAAACAATTTTTGGAATAATTAT
GGTAGAGGTTCTGTAACCATTTTCTTTGATCAACAATACATTGAGCAATTATCAAATCAA
GATACNTCATGTAGTGAAAATGTAATTTTAATTGGTAATTCAAATGAAAATTTAATAACT
AATAAATATATCATTAGATCAGATGTTTNTTTTAATCAAGATAATTCTTTCTATATTGGA
GGTGAAAATGGTTATTTATTCCAAGGTGATGGTATTGGTATTGCTTTCCTTATGCCAAAT
ANATGTGGTGGTAATTTAGTTTTAGTAATTGCTGGTACTGATTCACTTGGTTTAGATAAT
GCACTTCATTCAATTCCACAAANAAGTGGTGATATTACTGGCCCTGATTTCATTGTAACA
GGTCCTGATTTCCGTGGTAAAGGTTATGGTGGTATTATCTCTGCTGGTTATTGGGATAAT
TATTATAAATTATCTGATTCAAATTTTTATATTTNTGAAATTACAAATTAAAAAAAATTA
TNTAAATTATCCAAATTAAAAAAAAGTAATATTGTAAAATCCTATCAAATTTTCTCAAAA
TTGTAATTGCAAAATAATAAAATAATTAATCNCAATAATTCTTTTCAAAAAATAAAAAAA
AAATAAAAATAAATTAA
Length of connected seq. 1327
Full length Seq ID -
Full length Seq. -
Length of full length seq. -