SHC107
Library SH
(Link to library)
Clone ID SHC107
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11867-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SHC107 (SHC107Q) /CSM/SH/SHC1-A/SHC107Q.Seq.d/
XXXXXXXXXXAANNACCATCAACNGCNTCATCAACAACTTCAACAACAACAACAGCAACA
TCATCATCAACTTCAACTTCACCATNTAGTAGTTCATCTTCAATCTCCACTCCAACACCA
AGTNAATCCCNTTGATGAATCCGATGTATTCGCTTTTAATACTAGATTTAAGAGTAAANG
TATTCCGTGTTANAGTTATGGCAGTCGTTCAAAAAGAAACACCAGTTGAAGANCAAGAAA
CTCGTGATAAAGTTGATGAAGATAGANAACATCAAATTGNA
sequence update 2002. 9.10
Translated Amino Acid sequence
---XHQXXHQQLQQQQQQHHHQLQLHHXVVHLQSPLQHQVNPXDESDVFAFNTRFKSKXI
PCXSYGSRSKRNTS*rxrns**s**r*xtsnx


Translated Amino Acid sequence (All Frames)
Frame A:
---xtinxxinnfnnnnsniiinfnftx**fifnlhsntkxiplmnpmysllildlrvxv
frvxvmavvqketpvexqetrdkvdedrxhqix


Frame B:
---xpstassttsttttatssststspxsssssistptpsxsx**ircirf*y*i*e*xy
svlxlwqsfkkkhqlkxkklviklmkixnikl


Frame C:
---XHQXXHQQLQQQQQQHHHQLQLHHXVVHLQSPLQHQVNPXDESDVFAFNTRFKSKXI
PCXSYGSRSKRNTS*rxrns**s**r*xtsnx


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHC107 (SHC107Q) /CSM/SH/SHC1-A/SHC107Q.Seq.d/ 359 1e-98
VHE378 (VHE378Q) /CSM/VH/VHE3-D/VHE378Q.Seq.d/ 327 5e-89
VSK353 (VSK353Q) /CSM/VS/VSK3-C/VSK353Q.Seq.d/ 303 7e-82
VHQ327 (VHQ327Q) /CSM/VH/VHQ3-B/VHQ327Q.Seq.d/ 303 7e-82
VHH207 (VHH207Q) /CSM/VH/VHH2-A/VHH207Q.Seq.d/ 303 7e-82
VHG389 (VHG389Q) /CSM/VH/VHG3-D/VHG389Q.Seq.d/ 303 7e-82
VHB307 (VHB307Q) /CSM/VH/VHB3-A/VHB307Q.Seq.d/ 303 7e-82
SSI609 (SSI609Q) /CSM/SS/SSI6-A/SSI609Q.Seq.d/ 303 7e-82
SSC509 (SSC509Q) /CSM/SS/SSC5-A/SSC509Q.Seq.d/ 303 7e-82
CHQ457 (CHQ457Q) /CSM/CH/CHQ4-C/CHQ457Q.Seq.d/ 303 7e-82

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BI207328|BI207328.1 EST525368 cTOS Lycopersicon esculentum cDNA clone cTOS13D12 5' end,mRNA sequence. 44 1.5 1
AC151769|AC151769.3 Mus musculus BAC clone RP24-375O19 from chromosome 9, complete sequence. 44 1.5 1
AC116578|AC116578.3 Mus musculus chromosome 9 clone RP23-264P8, complete sequence. 44 1.5 1
AP003939|AP003939.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1008_F04, WORKING DRAFT SEQUENCE, 1 ordered pieces. 42 5.8 1
AC155281|AC155281.2 Bos taurus clone CH240-30G2, *** SEQUENCING IN PROGRESS ***, 58 unordered pieces. 42 5.8 1
CL773942|CL773942.1 OR_BBa0087B12.f OR_BBa Oryza rufipogon genomic clone OR_BBa0087B12 5', genomic survey sequence. 42 5.8 1
CL720084|CL720084.1 OR_BBa0048A14.r OR_BBa Oryza rufipogon genomic clone OR_BBa0048A14 3', genomic survey sequence. 42 5.8 1
CW665388|CW665388.1 OG_BBa0019P11.f OG_BBa Oryza glaberrima genomic clone OG_BBa0019P11 5', genomic survey sequence. 42 5.8 1
CW614086|CW614086.1 OA_ABa0156O13.r OA_ABa Oryza australiensis genomic clone OA_ABa0156O13 3', genomic survey sequence. 42 5.8 1
AP008213|AP008213.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7. 42 5.8 1
dna update 2005.12.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54NZ5) RecName: Full=Cullin-3; Short=CUL-3; AltName: ... 45 1e-07
AM484063_2(AM484063|pid:none) Vitis vinifera contig VV78X066416.... 32 6.7
AC013289_13(AC013289|pid:none) Arabidopsis thaliana chromosome 1... 32 6.7
AK230392_1(AK230392|pid:none) Arabidopsis thaliana mRNA for cull... 32 6.7
A86395(A86395) hypothetical protein T2P11.2 [imported] - Arabido... 32 6.7
AJ344541_1(AJ344541|pid:none) Arabidopsis thaliana partial mRNA ... 32 6.7
AJ319540_1(AJ319540|pid:none) Arabidopsis thaliana partial mRNA ... 32 6.7

protein update 2009. 1.15
PSORT

psg: 0.77 gvh: 0.45 alm: 0.60 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
24.0 %: mitochondrial
16.0 %: cytoplasmic
12.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for SHC107 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHC107Z
3' end seq.
>SHC107Z.Seq
NNNNNNNNNNAANNACCATCAACNGCNTCATCAACAACTTCAACAACAACAACAGCAACA
TCATCATCAACTTCAACTTCACCATNTAGTAGTTCATCTTCAATCTCCACTCCAACACCA
AGTNAATCCCNTTGATGAATCCGATGTATTCGCTTTTAATACTAGATTTAAGAGTAAANG
TATTCCGTGTTANAGTTATGGCAGTCGTTCAAAAAGAAACACCAGTTGAAGANCAAGAAA
CTCGTGATAAAGTTGATGAAGATAGANAACATCAAATTGNA
Length of 3' end seq. 281
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -