>SHB879 (SHB879Q) /CSM/SH/SHB8-D/SHB879Q.Seq.d/
XXXXXXXXXXTAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAG
GACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTA
TCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATG
CTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAA
ATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACNACNATNTCNTGACC
AAATTAAAAATCNATTAAAAAATATTCAACATGAACNACAAATCCAAGAACNACNAGATA
AATTAAATCAAGAAAAAAATCNACTATTATTAGAACAAGAACAAAATCAAAAATAATTTA
ATCATTNCTTCTTTTTAAAAAA

---KNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDA
VYLSDVEKAQLELDAELAKNNKQENQDENLVQEKXXXXDQIKNXLKNIQHEXQIQEXXDK
LNQEKNXLLLEQEQNQK*fnhxfflk

Frame A:
---KNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDA
VYLSDVEKAQLELDAELAKNNKQENQDENLVQEKXXXXDQIKNXLKNIQHEXQIQEXXDK
LNQEKNXLLLEQEQNQK*fnhxfflk


Frame B:
---kiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtml
st*vmlkklnlnwmlnwlkiinkrikmri*fkrnxxxxtklkix*kifnmnxksknxxin
*ikkkixyy*nknkiknnliixsf*k


Frame C:
---kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrercc
lle*c*ksst*igc*ig*k**tresr*efssrettxs*pn*ksikkyst*ttnprttr*i
ksrkkstiirtrtkskii*sxllfkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB879 (SHB879Q) /CSM/SH/SHB8-D/SHB879Q.Seq.d/                        585   e-166
AHN144 (AHN144Q) /CSM/AH/AHN1-B/AHN144Q.Seq.d/                        577   e-164
SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        569   e-161
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        569   e-161
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        569   e-161
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        569   e-161
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        569   e-161
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/                        569   e-161
SLB365 (SLB365Q) /CSM/SL/SLB3-C/SLB365Q.Seq.d/                        569   e-161
SLA333 (SLA333Q) /CSM/SL/SLA3-B/SLA333Q.Seq.d/                        569   e-161

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   500   e-170  3
BX897700|BX897700.1 Bartonella quintana str. Toulouse, complete genome.    38   0.11   8
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.15   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.15   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.15   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.15   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.15   1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence.    48   0.15   1
BH133394|BH133394.1 ENTNI62TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   0.25   2
AC167088|AC167088.2 Sorex araneus clone SA_Ba-114B13, WORKING DRAFT SEQUENCE, 5 ordered pieces.    40   0.82   4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   122   4e-27
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   3.9
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    32   5.0
CP000263_87(CP000263|pid:none) Buchnera aphidicola str. Cc (Cina...    32   5.0

 psg: 0.75  gvh: 0.11  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for SHB879 is nuc

>SHB879Z.Seq
NNNNNNNNNNTAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAG
GACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTA
TCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATG
CTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAA
ATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACNACNATNTCNTGACC
AAATTAAAAATCNATTAAAAAATATTCAACATGAACNACAAATCCAAGAACNACNAGATA
AATTAAATCAAGAAAAAAATCNACTATTATTAGAACAAGAACAAAATCAAAAATAATTTA
ATCATTNCTTCTTTTTAAAAAA