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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB878
Library SH
(Link to library)
Clone ID SHB878
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SHB878P
(Link to Original site)
Representative DNA sequence 
>SHB878 (SHB878Q) /CSM/SH/SHB8-D/SHB878Q.Seq.d/
CCTACTGGNAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAA
ATAATAGAAATAATAAAAATTAATATTAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXX
XXAACAAAATGGTAATGGTTCACTTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGG
AAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTT
ACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGC
NTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGA
ACTCTTACTTGAAGAGAATGAAGAAGAACNATTTTCAAATAAAAATTTACAACNACTTAA
TGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGA
ACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAA
GAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
ptgkftik*lfflfflfkv*IIEIIKINIKKRNVKKK---

---QNGNGSLAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHE
VAFLDENEQDAAKLQNEMDQLELLLEENEEEXFSNKNLQXLNENENQQQQQGQQQVQATN
VEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVE
Translated Amino Acid sequence (All Frames) 
Frame A:
ptgkftik*lfflfflfkv*IIEIIKINIKKRNVKKK---

---nkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnm
klxf*mkmnkmllnykmkwtn*nsylkrmkknxfqikiynxlmrmkinnnnkdnnkfkqq
mlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlk

Frame B:
llxnllsnnyfffsfflkfk**k**klilkkgtlkkk---

---tkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*
scxfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnk
c*ttnr*tt*syqrisktrstketknstrercclle*c*

Frame C:
ywxiyyqitifsflsf*slnnrnnkn*y*kker*kk---

---QNGNGSLAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHE
VAFLDENEQDAAKLQNEMDQLELLLEENEEEXFSNKNLQXLNENENQQQQQGQQQVQATN
VEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVE
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHF666 (SHF666Q) /CSM/SH/SHF6-C/SHF666Q.Seq.d/                        597   e-170
SHF248 (SHF248Q) /CSM/SH/SHF2-B/SHF248Q.Seq.d/                        597   e-170
SHB878 (SHB878Q) /CSM/SH/SHB8-D/SHB878Q.Seq.d/                        597   e-170
SHB559 (SHB559Q) /CSM/SH/SHB5-C/SHB559Q.Seq.d/                        597   e-170
CHJ114 (CHJ114Q) /CSM/CH/CHJ1-A/CHJ114Q.Seq.d/                        597   e-170
CHH761 (CHH761Q) /CSM/CH/CHH7-C/CHH761Q.Seq.d/                        597   e-170
SHF722 (SHF722Q) /CSM/SH/SHF7-A/SHF722Q.Seq.d/                        591   e-168
SHF568 (SHF568Q) /CSM/SH/SHF5-C/SHF568Q.Seq.d/                        591   e-168
SHF463 (SHF463Q) /CSM/SH/SHF4-C/SHF463Q.Seq.d/                        591   e-168
SHF412 (SHF412Q) /CSM/SH/SHF4-A/SHF412Q.Seq.d/                        591   e-168
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   589   0.0    3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   117   3e-22  1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.21   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.21   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.21   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.21   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.21   1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence.    48   0.21   1
DT461480|DT461480.1 GH_ON40P21.r GH_ON Gossypium hirsutum cDNA clone GH_ON40P21 3', mRNA sequence.    46   0.82   1
BP290409|BP290409.1 Homo sapiens cDNA clone: LNF05006, Sugano cDNA library, expressed in lung normal fibroblast.    46   0.82   1
dna update 2005.12.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   182   7e-45
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.1
(Q3B820) RecName: Full=UPF0564 protein FAM161A;                        34   3.2
AM392832_1(AM392832|pid:none) Synthetic construct Homo sapiens c...    34   3.2
BC107162_1(BC107162|pid:none) Homo sapiens family with sequence ...    34   3.2
AM393518_1(AM393518|pid:none) Synthetic construct Homo sapiens c...    34   3.2
CP000487_662(CP000487|pid:none) Campylobacter fetus subsp. fetus...    33   4.2
AE016796_1436(AE016796|pid:none) Vibrio vulnificus CMCP6 chromos...    33   5.5
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    32   9.4
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    32   9.4
protein update 2009. 4.15
PSORT 

 psg: 0.24  gvh: 0.31  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SHB878 is cyt
5' end seq. ID SHB878F
5' end seq. 
>SHB878F.Seq
CCTACTGGNAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAA
ATAATAGAAATAATAAAAATTAATATTAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNN
NN
Length of 5' end seq. 122
3' end seq. ID SHB878Z
3' end seq. 
>SHB878Z.Seq
NNNNNNNNNNAACAAAATGGTAATGGTTCACTTGCTGTAAACTCTCATAAGATTGTAACT
CAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCT
CAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACAT
GAAGTTGCNTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGAC
CAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACNATTTTCAAATAAAAATTTACAA
CNACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACA
AATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGAT
CAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAA
A
Length of 3' end seq. 481
Connected seq. ID SHB878P
Connected seq. 
>SHB878P.Seq
CCTACTGGNAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAA
ATAATAGAAATAATAAAAATTAATATTAAAAAAAGGAACGTTAAAAAAAAAA--------
--AACAAAATGGTAATGGTTCACTTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGG
AAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTT
ACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGC
NTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGA
ACTCTTACTTGAAGAGAATGAAGAAGAACNATTTTCAAATAAAAATTTACAACNACTTAA
TGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGA
ACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAA
GAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAA
Length of connected seq. 583
Full length Seq ID -
Full length Seq. -
Length of full length seq. -