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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB877
Library SH
(Link to library)
Clone ID SHB877
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16411-1
Original site URL
Representative seq. ID SHB877P
(Link to Original site)
Representative DNA sequence 
>SHB877 (SHB877Q) /CSM/SH/SHB8-D/SHB877Q.Seq.d/
ACTGTTGGCCTACTGGTATTAATAAATAATAATTAAAATTTGCATATATAAAAGNAAATA
AAAATTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAA
CATACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAG
AAGAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAA
AATCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATA
ATTTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTT
TTAAAAGATTATTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAA
ATTCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATT
CTCATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAG
TXXXXXXXXXXCAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACNGTAG
ATTTCTCAAATGTTGTTATCATTATGACTTCAAATTTAGGTAGTCAATACATCNTTGGTG
AACAAGCAAACAAAGAAGGTGGTAACAANTCTTTATCNCAAGCTTGTAAAGATAAAGTCA
TTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGATATAATTG
TCTTTACTCCATTGAGTAAAGAAAACNTTCATAGTATTATTACTCTTCAATTAAGATCCG
TCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTTAGATT
CAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTACATTG
AAAAGAATATTGTCACTGAACTTAGTAAANTCATCNTTGGTGGTAAATTAAAAGAAAATC
AAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTAAAAC
AACAACAACAACGTCCAGCTTCTCCAACCAAAAAACNAAAAACTATTAAATAAAAAAAAA
TAAAAAATAAATAAAATCTATGCNGTTTTTTTAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgink**lkfayikxnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPE
EFTDKTNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGF
KRLLAKQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILS-
--

---QVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYIXGEQANKEGGNXSLSQACKDKVI
DEVRKHFRPEFLNRLDDIIVFTPLSKENXHSIITLQLRSVEKRLEDQNMSLKISNDALDS
IINAAYDPIFGGRPLKRYIEKNIVTELSKXIXGGKLKENQGVVVNEKDHHLNFDIIDLKQ
QQQRPASPTKKXKTIK*kkiknk*nlcxffk
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllvlinnn*nlhi*kxikifyfl*tyyfl*inhiifqhtyiyiyf*nkik*kchliq
knllikqiqfc*elknwqeknqmyn*hqyiwllhy*mmkii*qnlylkklvemyqklmlv
lkdy*pnnlfkiqyhlkflqihyfykf*dqqhvikrimvili*qlti*ywdywmieiyyq
---

---QVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYIXGEQANKEGGNXSLSQACKDKVI
DEVRKHFRPEFLNRLDDIIVFTPLSKENXHSIITLQLRSVEKRLEDQNMSLKISNDALDS
IINAAYDPIFGGRPLKRYIEKNIVTELSKXIXGGKLKENQGVVVNEKDHHLNFDIIDLKQ
QQQRPASPTKKXKTIK*kkiknk*nlcxffk

Frame B:
llaywy**iiikiciykxk*kffifckhiifck*ii*ffnihiyiyifkik*nknvi*sr
riy**nkynfvknsrigkrkikctistntfgcyiik**r*fskiyi*kswwrctkn*cwf
*kiisqttcsksstt*nfskfiiftsfkisstsske*w*fsfss*pfnigiig**ryiis
---

---kywmkvvlpmvkvex*isqmllsl*lqi*vvntslvnkqtkkvvtxlyxklvkiksl
mklenisvqsf*ivsmi*lsllh*vkktfivlllfn*dpskrd*kikicl*rfqtml*iq
lsmlhmiqslvvdh*nvtlkrilslnlvxsslvvn*kkikvllsmkkiiistlil*i*nn
nnnvqllqpknxkllnkkk*kinkiyavfl

Frame C:
cwptgink**lkfayikxnknflffvnilfsvnksynfstyiyiyiflk*NKIKMSFNPE
EFTDKTNTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGF
KRLLAKQPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILS-
--

---sig*rssyrwsr*nxrflkccyhydfkfr*sihxw*tskqrrw*qxfixsl*r*sh*
*s*ktfpsrvfkssr*ynclysie*rkxs*yyyssikirrkeirrskyvfkdfkrcfrfn
yqcci*snlww*tietlh*keych*t**xhxww*ikrksrcccq*krsssql*yyrfktt
tttssfsnqktkny*ikknkk*iksmxff*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB877 (SHB877Q) /CSM/SH/SHB8-D/SHB877Q.Seq.d/                       1770   0.0
SHF870 (SHF870Q) /CSM/SH/SHF8-C/SHF870Q.Seq.d/                       1065   0.0
VHK241 (VHK241Q) /CSM/VH/VHK2-B/VHK241Q.Seq.d/                       1057   0.0
VHI333 (VHI333Q) /CSM/VH/VHI3-B/VHI333Q.Seq.d/                       1057   0.0
VHC167 (VHC167Q) /CSM/VH/VHC1-C/VHC167Q.Seq.d/                       1057   0.0
SLA860 (SLA860Q) /CSM/SL/SLA8-C/SLA860Q.Seq.d/                       1057   0.0
SLA449 (SLA449Q) /CSM/SL/SLA4-C/SLA449Q.Seq.d/                       1057   0.0
SHL887 (SHL887Q) /CSM/SH/SHL8-D/SHL887Q.Seq.d/                       1057   0.0
SHL827 (SHL827Q) /CSM/SH/SHL8-B/SHL827Q.Seq.d/                       1057   0.0
SHL818 (SHL818Q) /CSM/SH/SHL8-A/SHL818Q.Seq.d/                       1057   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017152|AE017152.1 Haemophilus ducreyi strain 35000HP section 2 of 6 of the complete genome.    46   4e-07  2
BA000028|BA000028.3 Oceanobacillus iheyensis HTE831 DNA, complete genome.    58   4e-04  1
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    36   0.027  12
AC105301|AC105301.44 Mus musculus clone rp23-317h14 map 17 strain C57BL/6J, complete sequence.    46   0.070  5
DQ163124|DQ163124.1 Candidatus Hamiltonella defensa clone P010083 genomic sequence.    38   0.080  2
DQ163419|DQ163419.1 Candidatus Hamiltonella defensa clone P090011 genomic sequence.    38   0.080  2
AC091254|AC091254.77 Mus musculus strain C57BL/6J clone rp23-364j24 map 17, complete sequence.    46   0.089  2
AC158438|AC158438.2 Atelerix albiventris clone LB4-205P18, WORKING DRAFT SEQUENCE, 4 ordered pieces.    50   0.11   1
AP008211|AP008211.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5.    50   0.11   1
AC135928|AC135928.2 Oryza sativa (japonica cultivar-group) chromosome 5 clone P0686B10, complete sequence.    50   0.11   1
dna update 2005.12.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970534_1(AJ970534|pid:none) Triticum turgidum subsp. durum par...   164   5e-39
AJ970533_1(AJ970533|pid:none) Triticum turgidum subsp. durum par...   163   9e-39
(Q6F2Y7) RecName: Full=Heat shock protein 101;  &AC130611_3(AC13...   163   9e-39
AF097363_1(AF097363|pid:none) Triticum aestivum heat shock prote...   163   1e-38
AJ970535_1(AJ970535|pid:none) Triticum turgidum subsp. durum par...   163   1e-38
AY764155_1(AY764155|pid:none) Vitis vinifera heat shock protein ...   163   1e-38
CP000422_1040(CP000422|pid:none) Pediococcus pentosaceus ATCC 25...   162   2e-38
AF174433_1(AF174433|pid:none) Triticum aestivum heat shock prote...   162   3e-38
AF083327_1(AF083327|pid:none) Zea mays 101 kDa heat shock protei...   161   3e-38
BT066296_1(BT066296|pid:none) Zea mays full-length cDNA clone ZM...   161   3e-38
protein update 2009. 4.15
PSORT 

 psg: 0.63  gvh: 0.36  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SHB877 is nuc
5' end seq. ID SHB877F
5' end seq. 
>SHB877F.Seq
ACTGTTGGCCTACTGGTATTAATAAATAATAATTAAAATTTGCATATATAAAAGNAAATA
AAAATTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAA
CATACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAG
AAGAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAA
AATCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATA
ATTTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTT
TTAAAAGATTATTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAA
ATTCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATT
CTCATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAG
TNNNNNNNNNN
Length of 5' end seq. 551
3' end seq. ID SHB877Z
3' end seq. 
>SHB877Z.Seq
NNNNNNNNNNCAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACNGTAGA
TTTCTCAAATGTTGTTATCATTATGACTTCAAATTTAGGTAGTCAATACATCNTTGGTGA
ACAAGCAAACAAAGAAGGTGGTAACAANTCTTTATCNCAAGCTTGTAAAGATAAAGTCAT
TGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGATATAATTGT
CTTTACTCCATTGAGTAAAGAAAACNTTCATAGTATTATTACTCTTCAATTAAGATCCGT
CGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTTAGATTC
AATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTACATTGA
AAAGAATATTGTCACTGAACTTAGTAAANTCATCNTTGGTGGTAAATTAAAAGAAAATCA
AGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTAAAACA
ACAACAACAACGTCCAGCTTCTCCAACCAAAAAACNAAAAACTATTAAATAAAAAAAAAT
AAAAAATAAATAAAATCTATGCNGTTTTTTTAAA
Length of 3' end seq. 634
Connected seq. ID SHB877P
Connected seq. 
>SHB877P.Seq
ACTGTTGGCCTACTGGTATTAATAAATAATAATTAAAATTTGCATATATAAAAGNAAATA
AAAATTTTTTATTTTTTGTAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAA
CATACATATATATATATATATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAG
AAGAATTTACTGATAAAACAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAA
AATCAAATGTACAATTAGCACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATA
ATTTAGCAAAATCTATATTTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTT
TTAAAAGATTATTAGCCAAACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAA
ATTCATTATTTTTACAAGTTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATT
CTCATTTAGCAGTTGACCATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAG
T----------CAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACNGTAG
ATTTCTCAAATGTTGTTATCATTATGACTTCAAATTTAGGTAGTCAATACATCNTTGGTG
AACAAGCAAACAAAGAAGGTGGTAACAANTCTTTATCNCAAGCTTGTAAAGATAAAGTCA
TTGATGAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGATATAATTG
TCTTTACTCCATTGAGTAAAGAAAACNTTCATAGTATTATTACTCTTCAATTAAGATCCG
TCGAAAAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTTAGATT
CAATTATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTACATTG
AAAAGAATATTGTCACTGAACTTAGTAAANTCATCNTTGGTGGTAAATTAAAAGAAAATC
AAGGTGTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTAAAAC
AACAACAACAACGTCCAGCTTCTCCAACCAAAAAACNAAAAACTATTAAATAAAAAAAAA
TAAAAAATAAATAAAATCTATGCNGTTTTTTTAAA
Length of connected seq. 1165
Full length Seq ID -
Full length Seq. -
Length of full length seq. -