>SHB876 (SHB876Q) /CSM/SH/SHB8-D/SHB876Q.Seq.d/
XXXXXXXXXXGGNTACAGGTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTG
ATAGATATCATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTT
TACCATCAAACTACAAATGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATT
TCACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTG
AATCATGTTGTAAATTCACACCAGTTTGCAAAC

---XTGHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLDLHCERQGDF
TCFMVKNPNFISSKHSCYGESCCKFTPVCK

Frame A:
---XTGHYTESGTGNPHLCDRYHCKRGMECHVVNGVPECLPSNYKCLDCLDLHCERQGDF
TCFMVKNPNFISSKHSCYGESCCKFTPVCK


Frame B:
---xqvitqnqvqvihiyvidiivkeewnvmllmvfqnvyhqttnv*iv*ifivrdkvis
pvlwlkiqisflvnivvmvnhvvnshqfan


Frame C:
---yrslhriryr*stfm**isl*krngmscc*wcsrmftiklqmfrlfrssl*etr*fh
lfyg*kskfhf**t*llw*iml*ihtslq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD478 (SSD478Q) /CSM/SS/SSD4-D/SSD478Q.Seq.d/                        515   e-145
SSA704 (SSA704Q) /CSM/SS/SSA7-A/SSA704Q.Seq.d/                        515   e-145
SLE329 (SLE329Q) /CSM/SL/SLE3-B/SLE329Q.Seq.d/                        515   e-145
SLB794 (SLB794Q) /CSM/SL/SLB7-D/SLB794Q.Seq.d/                        515   e-145
SHL588 (SHL588Q) /CSM/SH/SHL5-D/SHL588Q.Seq.d/                        515   e-145
SHL169 (SHL169Q) /CSM/SH/SHL1-C/SHL169Q.Seq.d/                        515   e-145
SHK884 (SHK884Q) /CSM/SH/SHK8-D/SHK884Q.Seq.d/                        515   e-145
SHK788 (SHK788Q) /CSM/SH/SHK7-D/SHK788Q.Seq.d/                        515   e-145
SHK535 (SHK535Q) /CSM/SH/SHK5-B/SHK535Q.Seq.d/                        515   e-145
SHJ893 (SHJ893Q) /CSM/SH/SHJ8-D/SHJ893Q.Seq.d/                        515   e-145

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18.    42   0.11   3
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    44   0.34   2
CV752175|CV752175.1 SJL6-009_A06_SJL6-009A06-T3_039.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   1.4    1
CV752026|CV752026.1 SJL6-007_B08_SJL6-007B08-T3_063.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   1.4    1
CV739281|CV739281.1 SJAL_019_73.T3 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   1.4    1
CV739266|CV739266.1 SJAL_019_64.T3 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   1.4    1
CV682259|CV682259.1 sjs6-009_H10_sjs6-009H10-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    44   1.4    1
CV581768|CV581768.1 sjmi-1-002_E12_sjmi-1-002E12-T3 Schistosoma japonicum miracidium cDNA Schistosoma japonicum cDNA, mRNA sequence.    44   1.4    1
BU725144|BU725144.1 SJMBXF01 SJM Schistosoma japonicum cDNA, mRNA sequence.    44   1.4    1
BZ438331|BZ438331.1 BONES46TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONES46, DNA sequence.    44   1.4    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                203   1e-51
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                154   9e-37
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    45   6e-04
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    43   0.003
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    43   0.003
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    42   0.008
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    41   0.014
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 39   0.054
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    37   0.16
AB011475_1(AB011475|pid:none) Arabidopsis thaliana genomic DNA, ...    37   0.16

 psg: 0.75  gvh: 0.33  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SHB876 is nuc

>SHB876Z.Seq
NNNNNNNNNNGGNTACAGGTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTG
ATAGATATCATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTT
TACCATCAAACTACAAATGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATT
TCACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTG
AATCATGTTGTAAATTCACACCAGTTTGCAAAC