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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB845
Library SH
(Link to library)
Clone ID SHB845
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1|Contig-U16344-1
Original site URL
Representative seq. ID SHB845P
(Link to Original site)
Representative DNA sequence 
>SHB845 (SHB845Q) /CSM/SH/SHB8-B/SHB845Q.Seq.d/
ACTGTTGGCCTACTGGNATTCAATCAAACAAACAAAAAACAACAATTTAAAAAAACAATA
ATTTATAGTAAAGTAAAAACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTA
TAAATTCCAATATTTTTTTTTAAATTAATTTCCAATTTTTCTGTTTTTTTACACAATCAC
AACCAACCCTATATCATTACTACCAACCCTATACCATTACAATCTTATTTATTAAATAAT
TATTATTTGTTGTATTATTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAAC
AAACAAAAAAAAAAXXXXXXXXXXCTTCAACATTGTTGGTAACGTTAAAATGGCCGCAAC
TGCAACTGTATATGCAAACATTGATGCTTTAATGTCAATCACCACTTCAACCCAAACTTC
AATATATCAATCATCAACCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATCAAG
ATCATCATCATCCATATATAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGCTGA
TGTTGCATGGTAACNTCAATGTCGTTGCTTCAGAAGCCAATCAAGATAAAATTGCNTCAT
GGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCNTCAGTTAGC
TGTCTCACNTCAAGCA
sequence update 2002.10.25
Translated Amino Acid sequence 
tvgllxfnqtnkkqqfkktiiyskvktikeslivffsssl*ipifffklisnfsvflhnh
nqpyiittnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---FNIVGNVKMAATATVYANIDALMSITTSTQTSIYQSSTKTVNGKTTTQSSSRSSSSI
YKQFVPMIVCSGTADVAW*xqcrcfrsqsr*ncxmvlysnssqpqllkvmsxqlavsxqa
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxfnqtnkkqqfkktiiyskvktikeslivffsssl*ipifffklisnfsvflhnh
nqpyiittnpiplqsyllnnyyllyyfsvylli*YLLASNKQKK---

---lqhcw*r*ngrncncickh*cfnvnhhfnpnfnisiinqdcqr*dhhsiiikiiiih
i*tirsndrlfryc*ccmvtsmsllqkpikiklxhgtvfkfisapvvkgnvssvscltss

Frame B:
llaywxsikqtknnnlkkq*fivk*kqlknh*lffspphykfqyffln*fpiflffytit
tnpisllptlyhynliy*iiiicciilvyic*fniy*qvtnkkk---

---FNIVGNVKMAATATVYANIDALMSITTSTQTSIYQSSTKTVNGKTTTQSSSRSSSSI
YKQFVPMIVCSGTADVAW*xqcrcfrsqsr*ncxmvlysnssqpqllkvmsxqlavsxqa

Frame C:
cwptgiqsnkqktti*knnnl**sknn*ritncffllltinsniff*infqffcfftqsq
ptlyhyyqpytitilfik*llfvvlf*cifvdlifisk*qtkkk---

---stllvtlkwpqlqlymqtlml*cqsplqpklqyinhqprlstvrpplnhhqdhhhpy
innsfq*sfvqvllmlhgnxnvvaseanqdkiaswyciqihlspsc*r*clxs*lshxk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB845 (SHB845Q) /CSM/SH/SHB8-B/SHB845Q.Seq.d/                        341   8e-93
CHJ139 (CHJ139Q) /CSM/CH/CHJ1-B/CHJ139Q.Seq.d/                        301   7e-81
SHB672 (SHB672Q) /CSM/SH/SHB6-C/SHB672Q.Seq.d/                        285   4e-76
SHF819 (SHF819Q) /CSM/SH/SHF8-A/SHF819Q.Seq.d/                        283   2e-75
SHF794 (SHF794Q) /CSM/SH/SHF7-D/SHF794Q.Seq.d/                        283   2e-75
SLH621 (SLH621Q) /CSM/SL/SLH6-A/SLH621Q.Seq.d/                        281   7e-75
SLH545 (SLH545Q) /CSM/SL/SLH5-B/SLH545Q.Seq.d/                        281   7e-75
SLE412 (SLE412Q) /CSM/SL/SLE4-A/SLE412Q.Seq.d/                        281   7e-75
SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/                        281   7e-75
SLE320 (SLE320Q) /CSM/SL/SLE3-A/SLE320Q.Seq.d/                        281   7e-75
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U83087|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds.   236   e-133  4
AL312770|AL312770.1 Tetraodon nigroviridis genome survey sequence T3 end of clone 031I16 of library A from Tetraodon nigroviridis.    46   0.93   1
AL329032|AL329032.1 Tetraodon nigroviridis genome survey sequence T3 end of clone 041O15 of library A from Tetraodon nigroviridis.    46   0.93   1
AL152739|AL152739.1 Anopheles gambiae GSS SP6 end of clone 24P01 of NotreDame1 library  from strain PEST of Anopheles gambiae (African malaria mosquito).    44   3.7    1
AC123593|AC123593.1 Genomic sequence for Medicago truncatula, clone MTABa0052G10, complete sequence.    44   3.7    1
AL845298|AL845298.5 Mouse DNA sequence from clone RP23-280N11 on chromosome 2.    44   3.7    1
dna update 2005.12.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p...    89   1e-29
AC015985_17(AC015985|pid:none) Arabidopsis thaliana chromosome I...    33   9.7
protein update 2008.11.13
PSORT 

 psg: 0.70  gvh: 0.44  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SHB845 is cyt
5' end seq. ID SHB845F
5' end seq. 
>SHB845F.Seq
ACTGTTGGCCTACTGGNATTCAATCAAACAAACAAAAAACAACAATTTAAAAAAACAATA
ATTTATAGTAAAGTAAAAACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTA
TAAATTCCAATATTTTTTTTTAAATTAATTTCCAATTTTTCTGTTTTTTTACACAATCAC
AACCAACCCTATATCATTACTACCAACCCTATACCATTACAATCTTATTTATTAAATAAT
TATTATTTGTTGTATTATTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAAC
AAACAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 324
3' end seq. ID SHB845Z
3' end seq. 
>SHB845Z.Seq
NNNNNNNNNNCTTCAACATTGTTGGTAACGTTAAAATGGCCGCAACTGCAACTGTATATG
CAAACATTGATGCTTTAATGTCAATCACCACTTCAACCCAAACTTCAATATATCAATCAT
CAACCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATCAAGATCATCATCATCCA
TATATAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGCTGATGTTGCATGGTAAC
NTCAATGTCGTTGCTTCAGAAGCCAATCAAGATAAAATTGCNTCATGGTACTGTATTCAA
ATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCNTCAGTTAGCTGTCTCACNTCAAG
CA
Length of 3' end seq. 362
Connected seq. ID SHB845P
Connected seq. 
>SHB845P.Seq
ACTGTTGGCCTACTGGNATTCAATCAAACAAACAAAAAACAACAATTTAAAAAAACAATA
ATTTATAGTAAAGTAAAAACAATTAAAGAATCACTAATTGTTTTTTTCTCCTCCTCACTA
TAAATTCCAATATTTTTTTTTAAATTAATTTCCAATTTTTCTGTTTTTTTACACAATCAC
AACCAACCCTATATCATTACTACCAACCCTATACCATTACAATCTTATTTATTAAATAAT
TATTATTTGTTGTATTATTTTAGTGTATATTTGTTGATTTAATATTTATTAGCAAGTAAC
AAACAAAAAAAAAA----------CTTCAACATTGTTGGTAACGTTAAAATGGCCGCAAC
TGCAACTGTATATGCAAACATTGATGCTTTAATGTCAATCACCACTTCAACCCAAACTTC
AATATATCAATCATCAACCAAGACTGTCAACGGTAAGACCACCACTCAATCATCATCAAG
ATCATCATCATCCATATATAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGCTGA
TGTTGCATGGTAACNTCAATGTCGTTGCTTCAGAAGCCAATCAAGATAAAATTGCNTCAT
GGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCNTCAGTTAGC
TGTCTCACNTCAAGCA
Length of connected seq. 666
Full length Seq ID -
Full length Seq. -
Length of full length seq. -