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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB840
Library SH
(Link to library)
Clone ID SHB840
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHB840 (SHB840Q) /CSM/SH/SHB8-B/SHB840Q.Seq.d/
XXXXXXXXXXTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATG
AGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGNTA
AATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACNAT
TTTCAAATGGAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGAC
AACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCA
AAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTG
TCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATA
ATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAGACAATNTCNTGCCCAA
ATTAAAAATCAATTAAAAAATATTCAACATGAGACAACAAATCCAAGAACANCAAGTATA
AATTAAATCAAGAAAAAAATCAACNATTATTAGAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---EQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAXKLQNEMDQLELLLEENEEEXF
SNGNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAV
YLSDVEKAQLELDAELAKNNKQENQDENLVQEKQTXSCPN*ksikkyst*dnksknxkyk
lnqeknqxlle
Translated Amino Acid sequence (All Frames) 
Frame A:
---EQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAXKLQNEMDQLELLLEENEEEXF
SNGNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAV
YLSDVEKAQLELDAELAKNNKQENQDENLVQEKQTXSCPN*ksikkyst*dnksknxkyk
lnqeknqxlle


Frame B:
---nklniynvlkmvkismsmklpnmklpf*mkmnkmlxnykmkwtn*nsylkrmkknxf
qmeiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmls
t*vmlkklnlnwmlnwlkiinkrikmri*fkrnrqxxaqiknqlkniqhettnprtxsin
*ikkkinxy*


Frame C:
---tsstftty*kw*ryr*v*scpt*sclfr*k*trcx*itk*ngpirtlt*re*rrtif
kwkfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccl
le*c*ksst*igc*ig*k**tresr*efssretdnxxpklkin*kifnmrqqiqexqv*i
ksrkkstiir
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB840 (SHB840Q) /CSM/SH/SHB8-B/SHB840Q.Seq.d/                        406   e-112
VHP272 (VHP272Q) /CSM/VH/VHP2-C/VHP272Q.Seq.d/                        391   e-108
VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        391   e-108
SLC269 (SLC269Q) /CSM/SL/SLC2-C/SLC269Q.Seq.d/                        391   e-108
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        391   e-108
SHL890 (SHL890Q) /CSM/SH/SHL8-D/SHL890Q.Seq.d/                        391   e-108
SHL879 (SHL879Q) /CSM/SH/SHL8-D/SHL879Q.Seq.d/                        391   e-108
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        391   e-108
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        391   e-108
SHL865 (SHL865Q) /CSM/SH/SHL8-C/SHL865Q.Seq.d/                        391   e-108
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   391   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   105   1e-18  1
BH136114|BH136114.1 ENTOV11TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    32   0.15   3
AC124708|AC124708.2 Mus musculus chromosome 6 clone RP24-79O16, complete sequence.    48   0.20   1
AC090712|AC090712.4 Mus musculus chromosome 6 clone RP23-230F22 strain C57BL6/J, complete sequence.    48   0.20   1
AC125523|AC125523.4 Mus musculus chromosome 15 clone RP24-376O18, complete sequence.    40   0.22   3
AC161603|AC161603.4 Mus musculus BAC clone RP23-304M9 from chromosome 15, complete sequence.    40   0.27   3
DV256320|DV256320.1 AEDAY74TO Aedes re-sequencing Aedes aegypti cDNA clone AEDAY74, mRNA sequence.    46   0.79   1
DT737154|DT737154.1 EST1171003 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1U785, mRNA sequence.    46   0.79   1
DT461480|DT461480.1 GH_ON40P21.r GH_ON Gossypium hirsutum cDNA clone GH_ON40P21 3', mRNA sequence.    46   0.79   1
dna update 2005.12.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   178   8e-44
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   1.1
(Q6ZQ12) RecName: Full=Ninein-like protein;                            35   1.8
AK129253_1(AK129253|pid:none) Mus musculus mRNA for mKIAA0980 pr...    35   1.8
AE016819_111(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    32   9.0
protein update 2009. 1.15
PSORT 

 psg: 0.75  gvh: 0.19  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SHB840 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHB840Z
3' end seq. 
>SHB840Z.Seq
NNNNNNNNNNTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATG
AGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGNTA
AATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACNAT
TTTCAAATGGAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGAC
AACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCA
AAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTG
TCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATA
ATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAGACAATNTCNTGCCCAA
ATTAAAAATCAATTAAAAAATATTCAACATGAGACAACAAATCCAAGAACANCAAGTATA
AATTAAATCAAGAAAAAAATCAACNATTATTAGAA
Length of 3' end seq. 575
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -