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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB837
Library SH
(Link to library)
Clone ID SHB837
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16259-1
Original site URL
Representative seq. ID SHB837P
(Link to Original site)
Representative DNA sequence 
>SHB837 (SHB837Q) /CSM/SH/SHB8-B/SHB837Q.Seq.d/
CTGTTGGCCTACTGGATTATATATTTTTCATTTTATTAAAATTAATAATATATAATATAT
AATATATATATTACTTTTACTAATATATATTTTTTTAATTTAAAAAAATGTTAATAAATA
AAATTTTATTTTTATTTTTTATTCTATCACTAACAATATTTAATATTGTTGATGCTGGTT
ATACTTTATCTGTTAAAGGAAAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAAA
TTACTGAAATTTTGTTAACTTCCCAAAAAATATTACCAGATTACTCAATTACATTCACTT
GTGAAATTCCATCTGCCAATAGCCCTGTTTGTACGAGTATGGATATGGACTTTACAAAAT
TAGCTGGAAAATTAACTCTAAGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCCT
ATGATATTAAAGCCAATCAAATTCCACTACCATTACCAACTGAGGTTAAATGGGAACCAC
CAACAATGGCTGGTACAGCTGCTCTTATGACTGGAGATTTCTTATTATTTGGTGAAGATG
TTACAACTCTTCCTGGTGTTTACAATTCAAAACCAGTGTCATTGGGTGTTTCATCAAATA
CTGACXXXXXXXXXXTGACAATTAAAGGTTCATTNTTTAATAAAAAGGACACTGGTTTGA
AAATTATGGTTGGAAATCATTCATGTGATTCTTTGACTATTGTAGATACCCAAACACTTA
CTTGATCTGCTCCACCAGGAAGTGGTATTAAAAATGCTGTTTCATTCATGGTTAAAGATG
CTGAATCAAAATTATCACCNCCATTGTTTTTAGATTATAGTCCNCCAACCATTATGTCAT
CAACAAGTGTAAAACAAGTTGAAGGTGGTCAAGTTACTATTTATGGTACCAATTTTGAAA
ATACTTTGATTACAGTAAATGTTGGAAGTAAATCATGTGAAGATGTTTCTGTAATAGATT
CAACCAAACTTACTTGTTCAATTTCAAAATCAACAATAGATCNTTCATTAACAAATAAGA
AATTGGCCGTAAATGTTNCTGTAAATGGTCAATCTGATAATGGTGAAGTATTTGAATATG
ATAATGAAGCACTCAATACTGAAANTCATAAACCAACATTAGCNCCAACTATAAAACCNA
sequence update 2002.10.25
Translated Amino Acid sequence 
vglldyiffillkliiyni*yiyyfy*yiff*FKKMLINKILFLFFILSLTIFNIVDAGY
TLSVKGKKLIYTGANVDFKITEILLTSQKILPDYSITFTCEIPSANSPVCTSMDMDFTKL
AGKLTLRGANLKTPNIVIAYDIKANQIPLPLPTEVKWEPPTMAGTAALMTGDFLLFGEDV
TTLPGVYNSKPVSLGVSSNTD---

---TIKGSXFNKKDTGLKIMVGNHSCDSLTIVDTQTLT*sappgsgiknavsfmvkdaes
klspplfldyspptimsstsvkqveggqvtiygtnfentlitvnvgskscedvsvidstk
ltcsiskstidxsltnkklavnvxvngqsdngevfeydnealntexhkptlaptikp
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywiiyfsfy*n**yiiyniyitftniyffnlkkc**ikfyfyflfyh*qylillmlv
ilyllkeks*yilvpm*iskllkfc*lpkkyyqitqlhslvkfhlpialfvrvwiwtlqn
*len*l*geqi*kpqi**lpmilkpikfhyhyqlrlngnhqqwlvqlll*leisyylvkm
lqlflvftiqnqchwvfhqil---

---*qlkvhxlikrtlv*klwleiihvil*ll*ipkhlldllhqevvlkmlfhswlkmln
qnyhxhcf*iivxqplchqqv*nklkvvkllfmvpilkil*lq*mlevnhvkmfl**iqp
nllvqfqnqq*ixh*qirnwp*mxl*mvnlimvkylnmimkhsilkxinqh*xql*nx

Frame B:
cwptglyifhfikinni*yiiyilllliyifli*knvnk*nfififysitnni*yc*cwl
yfic*rkkvniywcqcrfqny*nfvnfpknitrllnyihl*nsicq*pclyeygyglyki
swkinskgskfknpkysncl*y*sqsnsttitn*g*mgttnngwyscsydwrfliiw*rc
ynsswclqfktsvigcfiky*---

---dn*rfix**kghwfenygwksfm*ffdycrypntylicstrkwy*kccfihg*rc*i
kiitxivfrl*sxnhyvinkckts*rwssyylwyqf*kyfdyskcwk*im*rcfcnrfnq
tylfnfkinnrsfink*eigrkcxckwsi**w*si*i***stqy*xs*tnisxnykt

Frame C:
vglldyiffillkliiyni*yiyyfy*yiff*FKKMLINKILFLFFILSLTIFNIVDAGY
TLSVKGKKLIYTGANVDFKITEILLTSQKILPDYSITFTCEIPSANSPVCTSMDMDFTKL
AGKLTLRGANLKTPNIVIAYDIKANQIPLPLPTEVKWEPPTMAGTAALMTGDFLLFGEDV
TTLPGVYNSKPVSLGVSSNTD---

---TIKGSXFNKKDTGLKIMVGNHSCDSLTIVDTQTLT*sappgsgiknavsfmvkdaes
klspplfldyspptimsstsvkqveggqvtiygtnfentlitvnvgskscedvsvidstk
ltcsiskstidxsltnkklavnvxvngqsdngevfeydnealntexhkptlaptikp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB837 (SHB837Q) /CSM/SH/SHB8-B/SHB837Q.Seq.d/                       1877   0.0
SHF329 (SHF329Q) /CSM/SH/SHF3-B/SHF329Q.Seq.d/                        973   0.0
SHF303 (SHF303Q) /CSM/SH/SHF3-A/SHF303Q.Seq.d/                        973   0.0
AHR489 (AHR489Q) /CSM/AH/AHR4-D/AHR489Q.Seq.d/                        973   0.0
AHQ272 (AHQ272Q) /CSM/AH/AHQ2-C/AHQ272Q.Seq.d/                        973   0.0
SLA834 (SLA834Q) /CSM/SL/SLA8-B/SLA834Q.Seq.d/                        971   0.0
SHL869 (SHL869Q) /CSM/SH/SHL8-C/SHL869Q.Seq.d/                        971   0.0
SHL365 (SHL365Q) /CSM/SH/SHL3-C/SHL365Q.Seq.d/                        971   0.0
SHL288 (SHL288Q) /CSM/SH/SHL2-D/SHL288Q.Seq.d/                        971   0.0
SHK779 (SHK779Q) /CSM/SH/SHK7-D/SHK779Q.Seq.d/                        971   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    40   0.12   12
CZ518228|CZ518228.1 GMW2-73G17a.b1 GMW2 Glycine max genomic, genomic survey sequence.    46   1.6    1
CT010458|CT010458.8 Mouse DNA sequence from clone RP23-279C9 on chromosome 13.    44   2.5    7
CT571269|CT571269.5 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-292G10.    44   2.5    7
AW375848|AW375848.1 RC3-CT0197-220999-022-A10 CT0197 Homo sapiens cDNA, mRNA sequence.    40   2.9    2
AC172313|AC172313.1 Strongylocentrotus purpuratus clone R3-14A4, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces.    40   5.7    2
CK295567|CK295567.1 EST758281 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMCV80 5' end, mRNA sequence.    44   6.3    1
AC126969|AC126969.3 Rattus norvegicus clone CH230-197P4, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44   6.3    1
AC098757|AC098757.9 Rattus norvegicus clone CH230-86J1, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44   6.3    1
CZ544989|CZ544989.1 SRAA-aad59b06.g1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    44   6.3    1
dna update 2005.12.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso...    78   5e-13
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso...    61   8e-08
AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom...    57   1e-06
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso...    52   3e-05
AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromoso...    52   5e-05
FJ374909_1(FJ374909|pid:none) Dictyostelium discoideum strain QS...    51   8e-05
FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX...    49   2e-04
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS...    48   5e-04
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS...    48   5e-04
FJ374905_1(FJ374905|pid:none) Dictyostelium discoideum strain QS...    47   0.002
protein update 2009. 4.15
PSORT 

 psg: 1.02  gvh: 0.61  alm: 0.23  top: 0.40  tms: 0.07  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SHB837 is end
5' end seq. ID SHB837F
5' end seq. 
>SHB837F.Seq
CTGTTGGCCTACTGGATTATATATTTTTCATTTTATTAAAATTAATAATATATAATATAT
AATATATATATTACTTTTACTAATATATATTTTTTTAATTTAAAAAAATGTTAATAAATA
AAATTTTATTTTTATTTTTTATTCTATCACTAACAATATTTAATATTGTTGATGCTGGTT
ATACTTTATCTGTTAAAGGAAAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAAA
TTACTGAAATTTTGTTAACTTCCCAAAAAATATTACCAGATTACTCAATTACATTCACTT
GTGAAATTCCATCTGCCAATAGCCCTGTTTGTACGAGTATGGATATGGACTTTACAAAAT
TAGCTGGAAAATTAACTCTAAGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCCT
ATGATATTAAAGCCAATCAAATTCCACTACCATTACCAACTGAGGTTAAATGGGAACCAC
CAACAATGGCTGGTACAGCTGCTCTTATGACTGGAGATTTCTTATTATTTGGTGAAGATG
TTACAACTCTTCCTGGTGTTTACAATTCAAAACCAGTGTCATTGGGTGTTTCATCAAATA
CTGACNNNNNNNNNN
Length of 5' end seq. 615
3' end seq. ID SHB837Z
3' end seq. 
>SHB837Z.Seq
NNNNNNNNNNTGACAATTAAAGGTTCATTNTTTAATAAAAAGGACACTGGTTTGAAAATT
ATGGTTGGAAATCATTCATGTGATTCTTTGACTATTGTAGATACCCAAACACTTACTTGA
TCTGCTCCACCAGGAAGTGGTATTAAAAATGCTGTTTCATTCATGGTTAAAGATGCTGAA
TCAAAATTATCACCNCCATTGTTTTTAGATTATAGTCCNCCAACCATTATGTCATCAACA
AGTGTAAAACAAGTTGAAGGTGGTCAAGTTACTATTTATGGTACCAATTTTGAAAATACT
TTGATTACAGTAAATGTTGGAAGTAAATCATGTGAAGATGTTTCTGTAATAGATTCAACC
AAACTTACTTGTTCAATTTCAAAATCAACAATAGATCNTTCATTAACAAATAAGAAATTG
GCCGTAAATGTTNCTGTAAATGGTCAATCTGATAATGGTGAAGTATTTGAATATGATAAT
GAAGCACTCAATACTGAAANTCATAAACCAACATTAGCNCCAACTATAAAACCNA
Length of 3' end seq. 535
Connected seq. ID SHB837P
Connected seq. 
>SHB837P.Seq
CTGTTGGCCTACTGGATTATATATTTTTCATTTTATTAAAATTAATAATATATAATATAT
AATATATATATTACTTTTACTAATATATATTTTTTTAATTTAAAAAAATGTTAATAAATA
AAATTTTATTTTTATTTTTTATTCTATCACTAACAATATTTAATATTGTTGATGCTGGTT
ATACTTTATCTGTTAAAGGAAAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAAA
TTACTGAAATTTTGTTAACTTCCCAAAAAATATTACCAGATTACTCAATTACATTCACTT
GTGAAATTCCATCTGCCAATAGCCCTGTTTGTACGAGTATGGATATGGACTTTACAAAAT
TAGCTGGAAAATTAACTCTAAGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCCT
ATGATATTAAAGCCAATCAAATTCCACTACCATTACCAACTGAGGTTAAATGGGAACCAC
CAACAATGGCTGGTACAGCTGCTCTTATGACTGGAGATTTCTTATTATTTGGTGAAGATG
TTACAACTCTTCCTGGTGTTTACAATTCAAAACCAGTGTCATTGGGTGTTTCATCAAATA
CTGAC----------TGACAATTAAAGGTTCATTNTTTAATAAAAAGGACACTGGTTTGA
AAATTATGGTTGGAAATCATTCATGTGATTCTTTGACTATTGTAGATACCCAAACACTTA
CTTGATCTGCTCCACCAGGAAGTGGTATTAAAAATGCTGTTTCATTCATGGTTAAAGATG
CTGAATCAAAATTATCACCNCCATTGTTTTTAGATTATAGTCCNCCAACCATTATGTCAT
CAACAAGTGTAAAACAAGTTGAAGGTGGTCAAGTTACTATTTATGGTACCAATTTTGAAA
ATACTTTGATTACAGTAAATGTTGGAAGTAAATCATGTGAAGATGTTTCTGTAATAGATT
CAACCAAACTTACTTGTTCAATTTCAAAATCAACAATAGATCNTTCATTAACAAATAAGA
AATTGGCCGTAAATGTTNCTGTAAATGGTCAATCTGATAATGGTGAAGTATTTGAATATG
ATAATGAAGCACTCAATACTGAAANTCATAAACCAACATTAGCNCCAACTATAAAACCNA
Length of connected seq. 1130
Full length Seq ID -
Full length Seq. -
Length of full length seq. -