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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SHB830
Library SH
(Link to library)
Clone ID SHB830
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SHB830 (SHB830Q) /CSM/SH/SHB8-B/SHB830Q.Seq.d/
XXXXXXXXXXGCNTTTTTAGATGAAAATGAACAAGATGCTGNTAAATTACAAAATGAAAT
GGNCCAATTAGAANNTCTTACTTGAAGAGAATGAAGAAGNACAATTTTCAAATAAAAATT
TACAACANCTTAATGAGAATGAAAATCAACANCAACAACAAGGACAACAACAAGTTCAAG
CAACAAATGTTGANCANCAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGAC
AAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATG
T
sequence update 2002. 9.10
Translated Amino Acid sequence 
---xfr*k*trcx*itk*NGPIRXSYLKRMKKXNFQIKIYNXLMRMKINXNNKDNNKFKQ
QMLXXKSLNNLKLSKNFKDKINKRNKKFNKRTMLST*vm
Translated Amino Acid sequence (All Frames) 
Frame A:
---xf*mkmnkmlxnykmkwxn*xxlleeneexqfsnknlqxlnenenqxqqqgqqqvqa
tnvxxqiveqlkvikefqrqdqqkkqkiqqendavylsd


Frame B:
---xfr*k*trcx*itk*NGPIRXSYLKRMKKXNFQIKIYNXLMRMKINXNNKDNNKFKQ
QMLXXKSLNNLKLSKNFKDKINKRNKKFNKRTMLST*vm


Frame C:
---fldeneqdaxklqnemxqlexlt*re*rxtifk*kfttx**e*kstxttrtttsssn
kc*xxnr*tt*syqrisktrstketknstrercclle*c
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB830 (SHB830Q) /CSM/SH/SHB8-B/SHB830Q.Seq.d/                        222   2e-57
CHL874 (CHL874Q) /CSM/CH/CHL8-D/CHL874Q.Seq.d/                        216   1e-55
VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        216   1e-55
SSE796 (SSE796Q) /CSM/SS/SSE7-D/SSE796Q.Seq.d/                        216   1e-55
SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        216   1e-55
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        216   1e-55
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        216   1e-55
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        216   1e-55
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        216   1e-55
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/                        216   1e-55
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   216   e-106  3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    66   3e-15  2
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.10   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.10   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.10   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.10   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.10   1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence.    48   0.10   1
BP290409|BP290409.1 Homo sapiens cDNA clone: LNF05006, Sugano cDNA library, expressed in lung normal fibroblast.    48   0.10   1
AL772196|AL772196.13 Mouse DNA sequence from clone RP23-358M21 on chromosome 4.    38   0.18   4
dna update 2005.12.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...    49   2e-11
protein update 2009. 1.15
PSORT 

 psg: 0.59  gvh: 0.22  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SHB830 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SHB830Z
3' end seq. 
>SHB830Z.Seq
NNNNNNNNNNGCNTTTTTAGATGAAAATGAACAAGATGCTGNTAAATTACAAAATGAAAT
GGNCCAATTAGAANNTCTTACTTGAAGAGAATGAAGAAGNACAATTTTCAAATAAAAATT
TACAACANCTTAATGAGAATGAAAATCAACANCAACAACAAGGACAACAACAAGTTCAAG
CAACAAATGTTGANCANCAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGAC
AAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATG
T
Length of 3' end seq. 301
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -