AFI839
Library AF
(Link to library)
Clone ID AFI839
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10870-1
Original site URL
Representative seq. ID AFI839P
(Link to Original site)
Representative DNA sequence
>AFI839 (AFI839Q) /CSM/AF/AFI8-B/AFI839Q.Seq.d/
ATTGGAAAAAAAAACCATACAATGACCAAAGGAGGTAAAAAACCAACAGCTCATAAAAAG
GTTGTATCAACATTTACAATTCAAGAGCCAGAAGAATTCAAAGATAACACTAGAGAATTA
AAAGCTGAAGCTGAAAGAGTTAGACAAGAAGGATTTAGAAAGATTAAAGAAGAGAAATTA
CAAAAGGAACAAGCTTTAATCAGAGAAAAGCAAGAGGCTGAAGCAAAGAAAAAATTAGAA
GAACAAGAGAAATTAGAACAAGAACAAAAGAAAAAACAACAAGAAGAAGAGGATAAAAAA
AGAAAACAACAAGAAGAAGAGGATAAAATAAAACAACAACAATTGAAAAAAGAGGAAAAA
GAAAAAGAAATTAGAAGAAGAAGAAGAAAAGAAGAAAGCTGCTTCTGAGCAAGCTGAACA
AAAACAAGTTGCTGAAGATTCTGATAAAAAGAAAGCAGACGAAGCAGAAATTCGTCCATT
ATCTCATCCAACCCTTTCAAGACCATCTAAAAAATCATCATCGTCATTAAAGTTAAATAG
AGTTGAAACTGAATCAGAGGTCGAAGCATCAAAATCTGAAGXXXXXXXXXXGATGCAAAA
AAAGCTGCCGATGCTGAGGAATCAAAGAAAGCTGCCGATGCCAAGAAAGCTGCTGATGCA
GAAGCAAAGAAAGCTGCAGAAGCAAAGAAAGCTGCTGATGCAGAAGCAAAGAAAGCTGCT
GATGCCAAGAAAGCTGCTGCTGATGAAGAAGAAGCAAAGAAAGCTGCTGATGCCAAAAAA
GCTGCCGATGCCAAGAAGGCTGCTGATGAGGAAGAAGCAAAGAAAGCTGCTGATGCCAAG
AAAGTTGCTGATGCAGAAGCAAAGAAAGCTGCTGATGCTAAGAAAGCTGCTGATGAAGAA
GAAGCAAAGAAAGCTGCTGATGCAAAGAAAGCTGCTGAAGAAGAAGAAGCAAAGAAAGCT
GCTGATATCAAGAAAGCTGCAGAAGATGCCAAAAAAGCAGAAGATGCCAAAAAAGCAGAA
GATGCCAAAAAAGCAGAGGAGGATAGATTAGAAGCAGAGGCAGAAAAGAAAAGATTAGCA
GAAGAACAAGCAAAGAAAGAGGCAGATGCAAAGAAAGCAGAGGAGGATAGATTAGCAGCC
GAAGCAGAAAAGAAAAGATTAGAAGGGGAACAAGCAAAGAGAGCAGAAGAAGATAGATTA
GCAGCTGAAGCAGAAAAGAAAAGATTAGCAGATGAAGCAGAAAAGAAAAGATTAGCAGAT
GAAGCAGAAAAGAAAGAGGCTAAGGAAAGAAAGCAGAAGAAGNATGATTAGCAGC
sequence update 2001. 6. 2
Translated Amino Acid sequence
lekktiq*pkevknqqlikrlyqhlqfksqknskitlen*klklkeldkkdlerlkkrny
krnkl*sekskrlkqrkn*knkrn*nknkrknnkkkrikkennkkkrik*nnnn*KKRKK
KKKLEEEEEKKKAASEQAEQKQVAEDSDKKKADEAEIRPLSHPTLSRPSKKSSSSLKLNR
VETESEVEASKSE---

---DAKKAADAEESKKAADAKKAADAEAKKAAEAKKAADAEAKKAADAKKAAADEEEAKK
AADAKKAADAKKAADEEEAKKAADAKKVADAEAKKAADAKKAADEEEAKKAADAKKAAEE
EEAKKAADIKKAAEDAKKAEDAKKAEDAKKAEEDRLEAEAEKKRLAEEQAKKEADAKKAE
EDRLAAEAEKKRLEGEQAKRAEEDRLAAEAEKKRLADEAEKKRLADEAEKKEAKERKQKK
XD*q


Translated Amino Acid sequence (All Frames)
Frame A:
igkknhtmtkggkkptahkkvvstftiqepeefkdntrelkaeaervrqegfrkikeekl
qkeqalirekqeaeakkkleeqekleqeqkkkqqeeedkkrkqqeeedkikqqqlkkeek
ekeirrrrrkeescf*as*tktsc*rf**kesrrsrnssiissnpfkti*kiiivikvk*
s*n*irgrsiki*---

---DAKKAADAEESKKAADAKKAADAEAKKAAEAKKAADAEAKKAADAKKAAADEEEAKK
AADAKKAADAKKAADEEEAKKAADAKKVADAEAKKAADAKKAADEEEAKKAADAKKAAEE
EEAKKAADIKKAAEDAKKAEDAKKAEDAKKAEEDRLEAEAEKKRLAEEQAKKEADAKKAE
EDRLAAEAEKKRLEGEQAKRAEEDRLAAEAEKKRLADEAEKKRLADEAEKKEAKERKQKK
XD*q

Frame B:
lekktiq*pkevknqqlikrlyqhlqfksqknskitlen*klklkeldkkdlerlkkrny
krnkl*sekskrlkqrkn*knkrn*nknkrknnkkkrikkennkkkrik*nnnn*KKRKK
KKKLEEEEEKKKAASEQAEQKQVAEDSDKKKADEAEIRPLSHPTLSRPSKKSSSSLKLNR
VETESEVEASKSE---

---mqkklpmlrnqrklpmprkllmqkqrklqkqrkllmqkqrkllmprklllmkkkqrk
llmpkklpmprrllmrkkqrkllmprkllmqkqrkllmlrkllmkkkqrkllmqrkllkk
kkqrkllisrklqkmpkkqkmpkkqkmpkkqrrid*kqrqkrkd*qknkqrkrqmqrkqr
rid*qpkqkrkd*kgnkqreqkkid*qlkqkrkd*qmkqkrkd*qmkqkrkrlrkesrrx
miss

Frame C:
wkkkpyndqrr*ktnss*kgciniynsrarriqr*h*riks*s*ks*trri*kd*rreit
kgtsfnqrkarg*skekirrtreirtrtkekttrrrg*kkkttrrrg*nktttiekrgkr
krn*kkkkkrrklllsklnknkllkilikrkqtkqkfvhyliqpfqdhlknhhrh*s*ie
lklnqrskhqnlk---

---ckkscrc*gikescrcqesc*crskescrskesc*crskesc*cqescc**rrskes
c*cqkscrcqegc**grskesc*cqesc*crskesc*c*esc**rrskesc*ckesc*rr
rskesc*yqescrrcqksrrcqksrrcqksrgg*irsrgrkekisrrtskergrckesrg
g*issrsrkekirrgtskesrrr*iss*srkekisr*srkekisr*srkerg*gkkaeex
*la

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFI839 (AFI839Q) /CSM/AF/AFI8-B/AFI839Q.Seq.d/ 379 e-104
AHE880 (AHE880Q) /CSM/AH/AHE8-D/AHE880Q.Seq.d/ 361 2e-98
AFF719 (AFF719Q) /CSM/AF/AFF7-A/AFF719Q.Seq.d/ 347 3e-94
AHF228 (AHF228Q) /CSM/AH/AHF2-B/AHF228Q.Seq.d/ 274 3e-72
VFC817 (VFC817Q) /CSM/VF/VFC8-A/VFC817Q.Seq.d/ 192 9e-48
VSH818 (VSH818Q) /CSM/VS/VSH8-A/VSH818Q.Seq.d/ 180 4e-44
AHJ805 (AHJ805Q) /CSM/AH/AHJ8-A/AHJ805Q.Seq.d/ 141 3e-32
SLG140 (SLG140Q) /CSM/SL/SLG1-B/SLG140Q.Seq.d/ 74 6e-12
SLD788 (SLD788Q) /CSM/SL/SLD7-D/SLD788Q.Seq.d/ 68 4e-10
SFD787 (SFD787Q) /CSM/SF/SFD7-D/SFD787Q.Seq.d/ 50 9e-05

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AW626190|AW626190.1 EST320097 tomato radicle, 5 d post-imbibition, Cornell University Lycopersicon esculentum cDNA clone cLEZ18J22 5', mRNA sequence. 52 0.024 1
AW443708|AW443708.1 EST308638 tomato mixed elicitor, BTI Lycopersicon esculentum cDNA clone cLET45E21 5', mRNA sequence. 52 0.024 1
CK266731|CK266731.1 EST712809 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAC647 5' end, mRNA sequence. 52 0.024 1
BI422987|BI422987.1 EST533653 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC73E1 5' end, mRNA sequence. 52 0.024 1
CN216589|CN216589.1 30508 Suspension culture Solanum tuberosum cDNA, mRNA sequence. 52 0.024 1
AW648092|AW648092.1 EST326546 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI3K20 5', mRNA sequence. 52 0.024 1
AW737321|AW737321.1 EST338844 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD3K19 5', mRNA sequence. 52 0.024 1
AW030366|AW030366.1 EST273621 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC20B5, mRNA sequence. 52 0.024 1
CK265087|CK265087.1 EST711165 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABW67 5' end, mRNA sequence. 52 0.024 1
AW030540|AW030540.1 EST273795 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC20D2, mRNA sequence. 52 0.024 1
dna update 2004. 9.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q5GSP0) RecName: Full=DNA mismatch repair protein mutL; &AE017... 36 2.5

protein update 2009. 4.23
PSORT

psg: 0.26 gvh: 0.40 alm: 0.68 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.02
nuc: 0.83 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

84.0 %: nuclear
8.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for AFI839 is nuc

5' end seq. ID AFI839F
5' end seq.
>AFI839F.Seq
ATTGGAAAAAAAAACCATACAATGACCAAAGGAGGTAAAAAACCAACAGCTCATAAAAAG
GTTGTATCAACATTTACAATTCAAGAGCCAGAAGAATTCAAAGATAACACTAGAGAATTA
AAAGCTGAAGCTGAAAGAGTTAGACAAGAAGGATTTAGAAAGATTAAAGAAGAGAAATTA
CAAAAGGAACAAGCTTTAATCAGAGAAAAGCAAGAGGCTGAAGCAAAGAAAAAATTAGAA
GAACAAGAGAAATTAGAACAAGAACAAAAGAAAAAACAACAAGAAGAAGAGGATAAAAAA
AGAAAACAACAAGAAGAAGAGGATAAAATAAAACAACAACAATTGAAAAAAGAGGAAAAA
GAAAAAGAAATTAGAAGAAGAAGAAGAAAAGAAGAAAGCTGCTTCTGAGCAAGCTGAACA
AAAACAAGTTGCTGAAGATTCTGATAAAAAGAAAGCAGACGAAGCAGAAATTCGTCCATT
ATCTCATCCAACCCTTTCAAGACCATCTAAAAAATCATCATCGTCATTAAAGTTAAATAG
AGTTGAAACTGAATCAGAGGTCGAAGCATCAAAATCTGAAG----------
Length of 5' end seq. 581
3' end seq. ID AFI839Z
3' end seq.
>AFI839Z.Seq
----------GATGCAAAAAAAGCTGCCGATGCTGAGGAATCAAAGAAAGCTGCCGATGC
CAAGAAAGCTGCTGATGCAGAAGCAAAGAAAGCTGCAGAAGCAAAGAAAGCTGCTGATGC
AGAAGCAAAGAAAGCTGCTGATGCCAAGAAAGCTGCTGCTGATGAAGAAGAAGCAAAGAA
AGCTGCTGATGCCAAAAAAGCTGCCGATGCCAAGAAGGCTGCTGATGAGGAAGAAGCAAA
GAAAGCTGCTGATGCCAAGAAAGTTGCTGATGCAGAAGCAAAGAAAGCTGCTGATGCTAA
GAAAGCTGCTGATGAAGAAGAAGCAAAGAAAGCTGCTGATGCAAAGAAAGCTGCTGAAGA
AGAAGAAGCAAAGAAAGCTGCTGATATCAAGAAAGCTGCAGAAGATGCCAAAAAAGCAGA
AGATGCCAAAAAAGCAGAAGATGCCAAAAAAGCAGAGGAGGATAGATTAGAAGCAGAGGC
AGAAAAGAAAAGATTAGCAGAAGAACAAGCAAAGAAAGAGGCAGATGCAAAGAAAGCAGA
GGAGGATAGATTAGCAGCCGAAGCAGAAAAGAAAAGATTAGAAGGGGAACAAGCAAAGAG
AGCAGAAGAAGATAGATTAGCAGCTGAAGCAGAAAAGAAAAGATTAGCAGATGAAGCAGA
AAAGAAAAGATTAGCAGATGAAGCAGAAAAGAAAGAGGCTAAGGAAAGAAAGCAGAAGAA
GNATGATTAGCAGC
Length of 3' end seq. 724
Connected seq. ID AFI839P
Connected seq.
>AFI839P.Seq
ATTGGAAAAAAAAACCATACAATGACCAAAGGAGGTAAAAAACCAACAGCTCATAAAAAG
GTTGTATCAACATTTACAATTCAAGAGCCAGAAGAATTCAAAGATAACACTAGAGAATTA
AAAGCTGAAGCTGAAAGAGTTAGACAAGAAGGATTTAGAAAGATTAAAGAAGAGAAATTA
CAAAAGGAACAAGCTTTAATCAGAGAAAAGCAAGAGGCTGAAGCAAAGAAAAAATTAGAA
GAACAAGAGAAATTAGAACAAGAACAAAAGAAAAAACAACAAGAAGAAGAGGATAAAAAA
AGAAAACAACAAGAAGAAGAGGATAAAATAAAACAACAACAATTGAAAAAAGAGGAAAAA
GAAAAAGAAATTAGAAGAAGAAGAAGAAAAGAAGAAAGCTGCTTCTGAGCAAGCTGAACA
AAAACAAGTTGCTGAAGATTCTGATAAAAAGAAAGCAGACGAAGCAGAAATTCGTCCATT
ATCTCATCCAACCCTTTCAAGACCATCTAAAAAATCATCATCGTCATTAAAGTTAAATAG
AGTTGAAACTGAATCAGAGGTCGAAGCATCAAAATCTGAAG----------GATGCAAAA
AAAGCTGCCGATGCTGAGGAATCAAAGAAAGCTGCCGATGCCAAGAAAGCTGCTGATGCA
GAAGCAAAGAAAGCTGCAGAAGCAAAGAAAGCTGCTGATGCAGAAGCAAAGAAAGCTGCT
GATGCCAAGAAAGCTGCTGCTGATGAAGAAGAAGCAAAGAAAGCTGCTGATGCCAAAAAA
GCTGCCGATGCCAAGAAGGCTGCTGATGAGGAAGAAGCAAAGAAAGCTGCTGATGCCAAG
AAAGTTGCTGATGCAGAAGCAAAGAAAGCTGCTGATGCTAAGAAAGCTGCTGATGAAGAA
GAAGCAAAGAAAGCTGCTGATGCAAAGAAAGCTGCTGAAGAAGAAGAAGCAAAGAAAGCT
GCTGATATCAAGAAAGCTGCAGAAGATGCCAAAAAAGCAGAAGATGCCAAAAAAGCAGAA
GATGCCAAAAAAGCAGAGGAGGATAGATTAGAAGCAGAGGCAGAAAAGAAAAGATTAGCA
GAAGAACAAGCAAAGAAAGAGGCAGATGCAAAGAAAGCAGAGGAGGATAGATTAGCAGCC
GAAGCAGAAAAGAAAAGATTAGAAGGGGAACAAGCAAAGAGAGCAGAAGAAGATAGATTA
GCAGCTGAAGCAGAAAAGAAAAGATTAGCAGATGAAGCAGAAAAGAAAAGATTAGCAGAT
GAAGCAGAAAAGAAAGAGGCTAAGGAAAGAAAGCAGAAGAAGNATGATTAGCAGC
Length of connected seq. 1305
Full length Seq ID -
Full length Seq. -
Length of full length seq. -